old.robetta.org

Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650
	MAANRNAYPSGPRQGEELEPRESSTSSSVSTDSSTDSDDSSSGGSDSSSSVSSSTPRNAAGDAAARPASSATSGGASQNQRFVHLNPDLRFERPDNEYIPLPPQRDLQQVSTVLRRICVDKQRYPEGRHRMLDYFRVAVEMFVTEVRREYQQQYANAQRNGKVMQRFTWKNNGELAICYACCCDMLKLLYDSIQPGPLKPLWDSFVGQLPPLLIVESRVPVSILSEQTYHVKYMDWQKGGTRYAGDQHTANVRFPSAKDRRLKIEAYLKSGSGFRLAVLTQHVAVATSAAATSASPTSAQPPPTARAAEEPRPPFAGRLPGSAGVKVPLAPGVTVARPPVKMPMKQAAGAHGAAQANAAAPLASTGVKQMPPEMKHLFWLSVLAHVKGGEATRAFPDERLEALPGLLRLCEMTEEAAEMRILMDVLAASSGGVQTVFERLGGLLSFRRFAAHFIQRGDADALLQLVEQITRWRVAAWGSTSQQAWQTNMDQKRTPDLSWLRTLPLIPGAKRAAWGALLVVLEQRFIFRAPRPDDIGGAGVKRPRPEGQVGDLRAVLSDNVDMQKWVVPRVNVFSAVRLPVELRVPPLCTKLEEDTIRFLNAKRSYAVSTQREWCERLGKVLAASSVGQEGSHVPVWYDPYELLSVAVPDTVEGKEHA
tmhmm (0)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (16%)	----------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------XXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (35%)	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---X-----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------X-----------------------------------------------------------------------------------XXXXXXXXXXXXX--------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------XXXXXXXXXX
psipred	-----------------------------------------------------------------------------HHH-HH------EE--------------------HHEEEEE----------EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----EEEE------EEEEHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH----------EEEEEEEEEHH-------------------HHHHHHHHHHHHH-----EEEE--EEEEEE--------------------------------------------------------HHHH--------HH------HHHHHH---HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH----HHHHHHHHHHHHH--HHHHHHHH----EEEEHHHHHHHHHH----HHHHHHHHHHHHHHHH-----HHHHHHHHH-------HHHH--------HHHHHHHHHHHHHHHHHH----HHH---------------HHH-----------------EEEEEEEE-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH--------------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    60	    0.284
  max. Y     3	    0.164
  max. S    20	    0.273
  mean S     1-2    0.251
       D     1-2    0.198    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.198 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-102	alignment	5c3qB_201	1-311	0.1026	--
	103-299	alignment	2xseA_101	1-160	0.694400	OXIDOREDUCTASE
	300-350	alignment	2irfG_204	1-109	0.2368	GENE REGULATION/DNA
	351-438	alignment	3slaA_301	1-166	0.155300	SIGNALING PROTEIN
	439-535	alignment	3slaA_301	1-166	0.154500	SIGNALING PROTEIN
	536-588	alignment	4zy7B_201	1-128	0.1404	--
	589-657	alignment	4qrtA_103	1-275	0.212100	--

Ginzu Domain Prediction 2
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-102	cutpref	--	--	0.000000	--
	103-299	alignment	2xseA_101	1-160	0.694400	OXIDOREDUCTASE
	300-350	cutpref	--	--	0.000000	--
	351-438	msa	3slaA_301	1-166	0.155300	--
	439-535	msa	3slaA_301	1-166	0.154500	--
	536-588	cutpref	--	--	0.000000	--
	589-657	msa	4qrtA_103	1-275	0.212100	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
5661	Leishmania donovani	1 (5.56%)	0.0	54-648	64-661	861	69	606	ref|XP_003865158.1|	hypothetical protein, conserved [Leishmania donovani] emb|CB...
435258	Leishmania infantum JPCM5	1 (5.56%)	0.0	54-648	64-661	860	69	606	ref|XP_001469567.1|	conserved hypothetical protein [Leishmania infantum JPCM5] e...
347515	Leishmania major strain Friedlin	1 (5.56%)	0.0	53-648	63-661	852	69	607	ref|XP_001686609.1|	conserved hypothetical protein [Leishmania major strain Frie...
929439	Leishmania mexicana MHOM/GT/2001/U1103	1 (5.56%)	0.0	55-648	66-654	830	67	599	ref|XP_003874381.1|	conserved hypothetical protein [Leishmania mexicana MHOM/GT/...
420245	Leishmania braziliensis MHOM/BR/75/M2904	1 (5.56%)	0.0	54-648	65-671	816	64	611	ref|XP_001568673.1|	conserved hypothetical protein [Leishmania braziliensis MHOM...
59799	Angomonas deanei	2 (11.11%)	7E-93	86-362	60-323	348	49	278	gb|EPY20098.1|	hypothetical protein AGDE_14860 [Angomonas deanei]
134013	Phytomonas sp. isolate Hart1	1 (5.56%)	0.0	56-645	64-656	809	47	604	emb|CCW67100.1|	unnamed protein product [Phytomonas sp. isolate Hart1]
134006	Phytomonas sp. isolate EM1	1 (5.56%)	0.0	53-645	61-673	805	46	624	emb|CCW59927.1|	unnamed protein product [Phytomonas sp. isolate EM1]
5693	Trypanosoma cruzi	3 (16.67%)	0.0	45-647	52-623	835	39	603	ref|XP_805926.1|	hypothetical protein [Trypanosoma cruzi strain CL Brener] gb...
0	UNIDENTIFIED	1 (5.56%)	0.0	45-647	46-617	822	39	603	gb|ESS70088.1|	hypothetical protein TCDM_01206 [Trypanosoma cruzi Dm28c]
85056	Trypanosoma cruzi marinkellei	1 (5.56%)	1E-178	157-647	8-475	631	37	493	gb|EKF27784.1|	hypothetical protein MOQ_008484 [Trypanosoma cruzi marinkell...
1055687	Trypanosoma vivax Y486	1 (5.56%)	0.0	46-651	40-634	756	36	621	emb|CCC51434.1|	conserved hypothetical protein [Trypanosoma vivax Y486]
679716	Trypanosoma brucei gambiense DAL972	1 (5.56%)	0.0	51-646	110-665	698	32	600	emb|CBH15499.1|	hypothetical protein, conserved [Trypanosoma brucei gambiens...
999953	Trypanosoma brucei brucei strain 927/4 GUTat10.1	1 (5.56%)	0.0	51-646	78-633	688	32	600	ref|XP_822727.1|	hypothetical protein [Trypanosoma brucei brucei strain 927/4...
1068625	Trypanosoma congolense IL3000	1 (5.56%)	0.0	82-649	32-565	681	31	572	emb|CCC93636.1|	conserved hypothetical protein [Trypanosoma congolense IL300...