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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660
	MSSKRTEGTAADEERRRTSAASSGSSSVSSTDSDEASSSVSDSSSSGSGSSSDSESSDSERPSSTPQRQSAAAAERATSTQQLQQQRHVQLNPELRFERPDKEYIPLPPLRDMQDMVKVLFLLSTDKKRYPDGRHRTLDYFRVAVEMFVTEVRQEYKRQYQQAQRNGRAMQRFTWKNSGELAICFACCCDNVKLLYDSLQPGPLKPLWDAFVGQLPPMLIVQSRVPETMLSSQTYHTKYMDWVKGGTRYGGEQSTANVRFPSVADRRVKVETYLRSGAGYKIEAVQVGSTPAAPAAVPAAVAPRPSLAAAAAPMQALETRAPFAGRLPGTGSAKVPVAPGVGGPRPPVKVPMKHVGGGVAHGSVTTAAAPPLASTSVKQMPPEMKHLFWLSVLAHVKGGEASRAFPDDRLEALPGLLRLCEMTEHTEEMCILMDVLAASSSGVQTVFERLGGLLSFRRFASHFIQSEEAEPLMQLVEQLARWRVAAWGSTSQQAWQTDMNQRRTRDLMWLRTLPLIPEAKRAAWGALLLVMEQRYIFKAPRPDDTTAVDNPLKRRRSEVELGDLHAVLSDNVDMQRWVVPRVNVFSAVRLPVELRVPPLCTKLEENTVRFLNAKREYAEKMQVTWRERLEKILSAQPRAPGPAVPVPLWYDPYALLRVASPQP
tmhmm (0)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (18%)	--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------XXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXX-------------------XXXXXXXXXXXXXXXXXXX-----------XXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (34%)	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------XXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXX------X-X-XX-XXXXXXXXXXXXXXXXX--X-----XXXXXXXXXXXX------------------XXXX-X-------------------------------------------------------------------------------XXXXXXXXXXXXXX--------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------XX
psipred	---------------------------------HHHH---------------------------------HHH----------HHHHHHH-----EE------EE----------HHHHEEHHH----------EEEHHHHHHHHHHHHHHHHHHHHHHHHHHH-------EEEE-----HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH---HHHH--EEHHHHHHHHH---EE-------HH----HHHHHHHHHHHHH-----EEEEEEEE----------HHH-----------------------------------------------EEEHHH-----------HH----HHHHHHHH---HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH----HHHHHHHHHHHHH--HHHHHHHH----EEEEHHHHHHHHHH----HHHHHHHHHHHHHHHHH----HHHHHHHHH-------HHHH-------HHHHHHHHHHHHHHHHEE-------HHHHHH-------------------------------EEEEEE---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHH--------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    57	    0.172
  max. Y    39	    0.222
  max. S    16	    0.507
  mean S     1-38   0.302
       D     1-38   0.253    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.253 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-64	alignment	2cptA_101	1-117	0.085900	PROTEIN TRANSPORT
	65-114	alignment	3muwA_301	1-380	0.178300	VIRUS
	115-288	alignment	2xseA_301	1-160	0.697100	OXIDOREDUCTASE
	289-358	alignment	2irfG_207	1-109	0.2455	GENE REGULATION/DNA
	359-443	alignment	3slaA_301	1-166	0.203200	SIGNALING PROTEIN
	444-562	alignment	3rpuA_201	1-309	0.082000	CELL CYCLE
	563-663	alignment	1x4tA_305	1-92	0.258500	RNA BINDING PROTEIN

Ginzu Domain Prediction 2
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-64	msa	2cptA_101	1-117	0.085900	--
	65-114	msa	3muwA_301	1-380	0.178300	--
	115-288	alignment	2xseA_301	1-160	0.697100	OXIDOREDUCTASE
	289-358	cutpref	--	--	0.000000	--
	359-443	msa	3slaA_301	1-166	0.203200	--
	444-562	msa	3rpuA_201	1-309	0.082000	--
	563-663	alignment	1x4tA_305	1-92	0.258500	RNA BINDING PROTEIN

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
347515	Leishmania major strain Friedlin	1 (5.56%)	0.0	1-663	1-663	1024	100	663	ref|XP_001686609.1|	conserved hypothetical protein [Leishmania major strain Frie...
435258	Leishmania infantum JPCM5	1 (5.56%)	0.0	1-662	1-662	936	96	662	ref|XP_001469567.1|	conserved hypothetical protein [Leishmania infantum JPCM5] e...
5661	Leishmania donovani	1 (5.56%)	0.0	1-662	1-662	935	96	662	ref|XP_003865158.1|	hypothetical protein, conserved [Leishmania donovani] emb|CB...
929439	Leishmania mexicana MHOM/GT/2001/U1103	1 (5.56%)	0.0	1-663	1-656	894	90	664	ref|XP_003874381.1|	conserved hypothetical protein [Leishmania mexicana MHOM/GT/...
420245	Leishmania braziliensis MHOM/BR/75/M2904	1 (5.56%)	0.0	1-663	1-673	866	84	674	ref|XP_001568673.1|	conserved hypothetical protein [Leishmania braziliensis MHOM...
134006	Phytomonas sp. isolate EM1	1 (5.56%)	0.0	55-658	57-673	815	47	627	emb|CCW59927.1|	unnamed protein product [Phytomonas sp. isolate EM1]
59799	Angomonas deanei	2 (11.11%)	2E-95	92-358	60-333	356	47	284	gb|EPY20098.1|	hypothetical protein AGDE_14860 [Angomonas deanei]
134013	Phytomonas sp. isolate Hart1	1 (5.56%)	0.0	62-658	64-656	789	46	613	emb|CCW67100.1|	unnamed protein product [Phytomonas sp. isolate Hart1]
5693	Trypanosoma cruzi	3 (16.67%)	0.0	53-663	53-625	859	40	612	ref|XP_805926.1|	hypothetical protein [Trypanosoma cruzi strain CL Brener] gb...
0	UNIDENTIFIED	1 (5.56%)	0.0	53-663	47-619	844	40	612	gb|ESS70088.1|	hypothetical protein TCDM_01206 [Trypanosoma cruzi Dm28c]
85056	Trypanosoma cruzi marinkellei	1 (5.56%)	1E-178	174-663	17-477	631	39	495	gb|EKF27784.1|	hypothetical protein MOQ_008484 [Trypanosoma cruzi marinkell...
1055687	Trypanosoma vivax Y486	1 (5.56%)	0.0	48-661	40-631	723	36	630	emb|CCC51434.1|	conserved hypothetical protein [Trypanosoma vivax Y486]
1068625	Trypanosoma congolense IL3000	1 (5.56%)	0.0	54-661	3-564	685	31	608	emb|CCC93636.1|	conserved hypothetical protein [Trypanosoma congolense IL300...
679716	Trypanosoma brucei gambiense DAL972	1 (5.56%)	0.0	38-656	92-662	678	30	619	emb|CBH15499.1|	hypothetical protein, conserved [Trypanosoma brucei gambiens...
999953	Trypanosoma brucei brucei strain 927/4 GUTat10.1	1 (5.56%)	0.0	38-656	60-630	666	30	619	ref|XP_822727.1|	hypothetical protein [Trypanosoma brucei brucei strain 927/4...