old.robetta.org

Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620
	MAEKEEESMASRSVSSSYSDDSSYSSSTRSDNSSSGSGSGSGSSTTSSEEGVETQTGARRAPTRPAAGDSATSAATAVTSTPCSGLRSLQLNPELVFEQPDASWIDIPHGSGSVFRRVVTNYDDFPERRYRVIDYFRTAVEMFVTQVRQEYTHQYQQAKKNDRANIRFIWRNKGELAICFAACCDMLKLLYDRFRPGLERPNWDGIVGQFVLFLMAESRIPAAVLTEQTYKTKFLDWRKGGTRYQGEQLTSNVRFPSAEERRTKIETYLRSGEGYSIESTGVDLPSVVRPVPTHVKMTDAPVGQEETRNNGAFDVSNLASPLVGFSRARPPVKMRSKSHMKPPQAVIAGKQSVEEYRHLHWLAKLTQITGCSPTLEFPAERSYMILAFVRLCETSEMPEQFATIMNILVRSSLTIQSAFERGGGMVVLRRFVGTLVRLKDACGLINLLEQILRLKLSSWSHSSQQSWLRDLLGNSGNDLRWLRALDIVPPDKQATWSSLITALEQRYVLSNSREEEVRRGAKRARLDNDEALRMSMADNVGVSKLAPYISTAFCVSLPGEFCAPPLSSDMEQDTISLLNKKLQYCEEAQVTWRDAILKALGGSCPGIPIPLWYDPYQLLGVDPYPAN
tmhmm (0)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (12%)	----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (37%)	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-X----------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------XXXXXXX--------------------------------------------------------------------------------XXXXXXXXXXXXX-------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------------------XXXX
psipred	---------HHHHHHH-------------------------------------------------------------------HHHHHH------EE-------------HHHHEEEHH----------EEEHHHHHHHHHHHHHHHHHHHHHHHHHHH------EEEEE-----HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH---HHHH--EEHHHHHHHHH---EE-------HH----HHHHHHHHHHHHH-----EEEEEEEE-----------HHHH----------------------------------------------HHHHHHH--HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH----HHHHHHHHHHHHH--HHHHHHHH----EEEEHHHHHHHH------HHHHHHHHHHHHHHHHH----HHHHHHHHH-------HHHH-------HHHHHHHHHHHHHHHH-------HHHHH-HH------HHHHH--------------------EEEE------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH---------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    26	    0.129
  max. Y     2	    0.192
  max. S     1	    0.359
  mean S     1-1    0.359
       D     1-1    0.257    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.257 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-79	alignment	m544A_201	1-80	0.115000	--
	80-120	alignment	3on7A_201	1-269	0.333300	OXIDOREDUCTASE
	121-307	alignment	2kvpA_308	1-165	0.743400	STRUCTURAL PROTEIN
	308-375	alignment	3hl1A_202	1-289	0.1493	METAL BINDING PROTEIN
	376-536	alignment	4ykcA_104	1-104	0.100600	--
	537-627	alignment	1x4tA_305	1-92	0.197000	RNA BINDING PROTEIN

Ginzu Domain Prediction 2
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-79	msa	m544A_201	1-80	0.115000	--
	80-120	alignment	3on7A_201	1-269	0.333300	OXIDOREDUCTASE
	121-307	alignment	2kvpA_308	1-165	0.743400	STRUCTURAL PROTEIN
	308-375	cutpref	--	--	0.000000	--
	376-536	msa	4ykcA_104	1-104	0.100600	--
	537-627	msa	1x4tA_305	1-92	0.197000	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
5693	Trypanosoma cruzi	3 (16.67%)	0.0	1-627	1-627	1020	100	627	ref|XP_805926.1|	hypothetical protein [Trypanosoma cruzi strain CL Brener] gb...
0	UNIDENTIFIED	1 (5.56%)	0.0	52-627	46-621	898	98	576	gb|ESS70088.1|	hypothetical protein TCDM_01206 [Trypanosoma cruzi Dm28c]
85056	Trypanosoma cruzi marinkellei	1 (5.56%)	0.0	173-627	25-479	688	91	455	gb|EKF27784.1|	hypothetical protein MOQ_008484 [Trypanosoma cruzi marinkell...
1055687	Trypanosoma vivax Y486	1 (5.56%)	0.0	82-622	64-629	736	48	571	emb|CCC51434.1|	conserved hypothetical protein [Trypanosoma vivax Y486]
59799	Angomonas deanei	2 (11.11%)	4E-89	89-310	57-282	335	48	227	gb|EPY20098.1|	hypothetical protein AGDE_14860 [Angomonas deanei]
1068625	Trypanosoma congolense IL3000	1 (5.56%)	0.0	89-623	33-563	689	41	547	emb|CCC93636.1|	conserved hypothetical protein [Trypanosoma congolense IL300...
347515	Leishmania major strain Friedlin	1 (5.56%)	0.0	62-625	62-663	824	40	602	ref|XP_001686609.1|	conserved hypothetical protein [Leishmania major strain Frie...
435258	Leishmania infantum JPCM5	1 (5.56%)	0.0	62-624	62-662	819	40	601	ref|XP_001469567.1|	conserved hypothetical protein [Leishmania infantum JPCM5] e...
5661	Leishmania donovani	1 (5.56%)	0.0	62-624	62-662	819	40	601	ref|XP_003865158.1|	hypothetical protein, conserved [Leishmania donovani] emb|CB...
929439	Leishmania mexicana MHOM/GT/2001/U1103	1 (5.56%)	0.0	65-625	66-656	791	40	592	ref|XP_003874381.1|	conserved hypothetical protein [Leishmania mexicana MHOM/GT/...
134013	Phytomonas sp. isolate Hart1	1 (5.56%)	0.0	62-621	64-656	763	40	600	emb|CCW67100.1|	unnamed protein product [Phytomonas sp. isolate Hart1]
679716	Trypanosoma brucei gambiense DAL972	1 (5.56%)	0.0	39-619	93-662	735	40	588	emb|CBH15499.1|	hypothetical protein, conserved [Trypanosoma brucei gambiens...
999953	Trypanosoma brucei brucei strain 927/4 GUTat10.1	1 (5.56%)	0.0	39-619	61-630	724	40	588	ref|XP_822727.1|	hypothetical protein [Trypanosoma brucei brucei strain 927/4...
420245	Leishmania braziliensis MHOM/BR/75/M2904	1 (5.56%)	0.0	60-625	64-673	778	39	610	ref|XP_001568673.1|	conserved hypothetical protein [Leishmania braziliensis MHOM...
134006	Phytomonas sp. isolate EM1	1 (5.56%)	0.0	59-621	61-673	762	38	617	emb|CCW59927.1|	unnamed protein product [Phytomonas sp. isolate EM1]