old.robetta.org

Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580
	MGSSGYDTSYKSSLSSAPSSVGSRTSRQISEGATSVFSGETSSVSGHDPVFRNVKRNPNLQFLKPDDSVIHVSPSARNVVRYVASNYDSFPDGHYRVVDYFRVAVEMFLQQVRLEYEKQAVQAVKNGVKKPRYTWGNKSGLAISYATSCDMLKLLYDVISEENRPKWDEVVKQFIYFLISESGIPGGVFSEQTYHTKFLDWRKGGTRYQNLSMASNVRFPSASHRRQGVENYLRSGSWLSMKTTEVTVLANTDGTSRGESMGGVTDSTPSCSNSHASSMCYPPATRIQQRINMEHPVVPAMAKQVDDFSPRRTRWREKLTQIMGSPSARGLGEDRSNMVLTFVRLCQVCDSAEQAESLTDIIVESDESIQRSFEGNGGIAVLRRFVGEPKWGCQFKFLFGLVEKLLRMRLMSWGTESRQSWLRDLNGRGRRNLDWLRNIEVIPKGEREKWTNLVRELEARYVLMPSHRDLEQPARVKRPPTGREGLEQKVASSDGHSVKPQLCVSNSRCRRLPTEFLTLPDPEAEGDVNNFMDRKAKYCEDGQAEWRKALRKAAGVDLGGVSVPIWYDPYQLLDTSQCSSA
tmhmm (0)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (5%)	--------XXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (30%)	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------XXXXXX--------------------------------------------------------------------------------XXXXXXXXXXXXX-------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------------------------XXX
psipred	--------------------------------------HHH--------HHHHH------EE------EE--------EEEEEE----------EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH------EEE------EEEEHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH----------EEEEHHHHHH--------------------HHHHHHHHHHHHH-----EEEEEEEEEE---------------------------------------------------HHHHHHH----HHHHHHHHHHH----------HHHHHHHHHHHHHHH----HHHHHHHHHHHHH--HHHHHHHH----EEEEHHHHHHHHHH---HHHHHHHHHHHHHHHHH-----HHHHHHHHH-------HHHH-------HHHHHHHHHHHHHHHHH------HHHH-----------------------------------HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH----

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    24	    0.149
  max. Y    33	    0.217
  max. S    27	    0.520
  mean S     1-32   0.307
       D     1-32   0.252    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.252 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-65	alignment	2criA_201	1-147	0.1157	TRANSPORT PROTEIN
	66-280	alignment	2xseA_301	1-160	0.739400	OXIDOREDUCTASE
	281-388	alignment	5cm9A_201	1-405	0.066700	--
	389-493	alignment	5cm8A_201	1-419	0.050300	--
	494-581	alignment	3vocA_304	1-416	0.216900	hydrolase

Ginzu Domain Prediction 2
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-65	cutpref	--	--	0.000000	--
	66-280	alignment	2xseA_301	1-160	0.739400	OXIDOREDUCTASE
	281-388	msa	5cm9A_201	1-405	0.066700	--
	389-493	msa	5cm8A_201	1-419	0.050300	--
	494-581	msa	3vocA_304	1-416	0.216900	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
999953	Trypanosoma brucei brucei strain 927/4 GUTat10.1	1 (5.56%)	0.0	1-581	58-638	866	100	581	ref|XP_822727.1|	hypothetical protein [Trypanosoma brucei brucei strain 927/4...
679716	Trypanosoma brucei gambiense DAL972	1 (5.56%)	0.0	1-581	90-670	875	99	581	emb|CBH15499.1|	hypothetical protein, conserved [Trypanosoma brucei gambiens...
0	UNIDENTIFIED	1 (5.56%)	0.0	19-575	48-615	766	40	571	gb|ESS70088.1|	hypothetical protein TCDM_01206 [Trypanosoma cruzi Dm28c]
1068625	Trypanosoma congolense IL3000	1 (5.56%)	0.0	54-575	33-561	662	40	536	emb|CCC93636.1|	conserved hypothetical protein [Trypanosoma congolense IL300...
85056	Trypanosoma cruzi marinkellei	1 (5.56%)	1E-160	138-575	25-473	571	40	451	gb|EKF27784.1|	hypothetical protein MOQ_008484 [Trypanosoma cruzi marinkell...
5693	Trypanosoma cruzi	3 (16.67%)	0.0	19-575	54-621	784	39	570	ref|XP_805926.1|	hypothetical protein [Trypanosoma cruzi strain CL Brener] gb...
59799	Angomonas deanei	2 (11.11%)	2E-80	54-280	57-279	306	39	233	gb|EPY20098.1|	hypothetical protein AGDE_14860 [Angomonas deanei]
1055687	Trypanosoma vivax Y486	1 (5.56%)	0.0	32-575	41-628	691	38	593	emb|CCC51434.1|	conserved hypothetical protein [Trypanosoma vivax Y486]
134006	Phytomonas sp. isolate EM1	1 (5.56%)	0.0	23-577	60-675	709	31	620	emb|CCW59927.1|	unnamed protein product [Phytomonas sp. isolate EM1]
134013	Phytomonas sp. isolate Hart1	1 (5.56%)	0.0	26-577	65-658	697	31	599	emb|CCW67100.1|	unnamed protein product [Phytomonas sp. isolate Hart1]
347515	Leishmania major strain Friedlin	1 (5.56%)	0.0	18-576	62-659	749	30	607	ref|XP_001686609.1|	conserved hypothetical protein [Leishmania major strain Frie...
435258	Leishmania infantum JPCM5	1 (5.56%)	0.0	18-576	62-659	749	30	607	ref|XP_001469567.1|	conserved hypothetical protein [Leishmania infantum JPCM5] e...
5661	Leishmania donovani	1 (5.56%)	0.0	18-576	62-659	748	30	607	ref|XP_003865158.1|	hypothetical protein, conserved [Leishmania donovani] emb|CB...
929439	Leishmania mexicana MHOM/GT/2001/U1103	1 (5.56%)	0.0	19-576	64-652	718	30	598	ref|XP_003874381.1|	conserved hypothetical protein [Leishmania mexicana MHOM/GT/...
420245	Leishmania braziliensis MHOM/BR/75/M2904	1 (5.56%)	0.0	18-576	66-669	703	30	606	ref|XP_001568673.1|	conserved hypothetical protein [Leishmania braziliensis MHOM...