old.robetta.org

Click the icons below each image to download the prediction in PDB format ( )

Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780 . 790 . 800 . 810 . 820
	MEPDSKKVKLDIFNFPTTRETRTPEEVAESYAEAVKSHPFYDNVHSVVDFYDSGTIKDGRGQIIGVVLREALPKYAASMASELLTSAAVRTSLRSMMFGGEPPLSGIAGYFDYRGSPVELKSRKTSFTYEHEAAWPAVFPVVDYVSEIYRHVAPERWKAQNDAIPDLVRIHGTPFSTLTINSRFRTASHTDVGDFDAGYSCIACLDGQFKGLALSFDDFGINVLLQPRDVMIFDSHHFHSNTEVELSFSGEDWKRLTCVFYYRAALGEPASYAEYQRRLEKSKTDTRFTPVVHHVRVKENGTSVNRPSPVYPISQSPFWVPMVAHCLQHCASAAQCVHEAMTADGSRLAEMMFGESLSTSDGIPLRGEDEKVKANGDSTPRPLSRLGGFSETNLMVSTAVEKKKYLDSEFLLHCISAQLLDMWKQARARWLELVGKEWAHMLALNPERKDFLWKNQSEMNSAFFDLCEVGKQVMLGLLGKEVALPKEEQAFWIMYAVHLSAACAEELHMPEVAMSLRKLNVKLKDFNFGGTRYFKDMPPEEKKRRMERKQRIEEARRHGMPSGSHEKRANWLTNDSFDYQTEDCVIDYAQHKWVLPALHAKEVTKTVRTGELPTTERVVRVLVVIPDPQSKLENVDCKLEVPDMVGSSSEWERLMSSPAVHRVLSAAQRNLQLPDSVTHGNVQTHFAFHSTLPTDIYDFVVLQHVLSRIPDDAQASAYIRRAAALCSGCLFVVETDVQCRQYYTLKYSIRCSYDTVAPLFFQQLHRVCYGTKTARVRTKGELESLIPTVCCARYKLQGSPLNTTVHVVSPFPSCEVQNLSSALCDRA
tmhmm (0)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (5%)	---------------XXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXX-------------------------------------------------------------------------------------------------------
coiled-coils (0%)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (11%)	XXXXXX-XXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXX--XXXX----------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XX
psipred	---------EEEE----------HHHHHHHHHHHHHH--------EEEEE---EEEE----EEEEEEE-----HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH------HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---EEEE------EEEEE------------------EEEEEEE------EEEEHH--EEEE-----EEEEEE-EE----EEEEE-----EEEEEEEEEEHHH-----HHHHHHHHHHHHH--------HHHEEE--------------------HHHHHHHHHHHHHHHH----HHHHH----HHHHHH----------------HH---------------------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH---HHHH--HHH--EEEE-----EEE-----HHHHHHHHHHHHHHHHHHHH--------------------------EEEHHH-----HHHHHHHH---------------EEEEEE-----------------------HHHHHHHHH-HHHHHHHHH---------------EEEEEEE-------HHHHHHHHHHHHH---HHHHHHHHHHHHHHH---EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH----HHHHHH--HHHHHEEE-------EEEEEE------HHH-HHHHH----
sam	-----H----EE-----------HHHHHHHHHHHHH----------EEEE---EEEE----EEEEEEE---HHHHHHHH-----HHH--------------------EEEE-------EEE----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH------E------EEEEEE-----------------EEEEEEEEEEEE-EHHHHHH--EEEE----EEEEEE--------EEEE------EEEEEEEEEE---------HHHHHHHHHHHHHHH---------EEE-------------------HHHHHHHHHHHHHHHHHHHHHHHH-----EEEEEH----EE------------------E-------------HHHHHHHHHHHHHHH--HHHHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHH------EEEE---HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH---HHHHHHHH---EE-------EEEE-------HHHHHHHHHHHHHHHHH------------------------EEEEEE-----------------------------EEEEEEE-------------------------HHHHHH--HHHHHHHHH---------------EEEEEEE-------HHHHHHHHHHH---HHHHHHHHHHHHHHHH--EEEEEEEE-------EEEEE--HHHHHHHHHHHHHHHHHHHH--EEEEEE--HHHHHH---EEE---EE------EEEEEEE------------------
jufo	-------EEEEE------------HHHHHHHHHHH---------EEEEEE-----------EEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHH-----------------------EE---------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----EEEEE-----EEEEEHHH--------------EEEEEEEE-----EEEEHHHH-EEEE----EEEEEE--------------------EEEEEEEEHH-------HHHHHHHHHHHHH---------EEEEE-------------------HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH------------------------------------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------EE----HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH------HHHHHHHHHHH------------------HHHHHHHHHHHHHHHH--------------------------EEEHHH---------HHHH---------------EEEEEEEE------------------------HHHHHHHHHHHHHHHHHHH-------------EEEEEEE----------EEEEHH--------HHHHHHHHHHHHHH--EEEEEEE---HHHEEEEEEHHHH----HHHHHHHHHHHHH------------HHHHHH-------EEE------EEEEEEE-----HHH---HH-----

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    22	    0.116
  max. Y    31	    0.126
  max. S    22	    0.201
  mean S     1-30   0.116
       D     1-30   0.122    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.122 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-320	alignment	4ie6A_306	1-447	0.627700	OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
	321-377	alignment	4v4nBG_201	1-125	0.079600	--
	378-574	alignment	2xseA_201	1-160	0.846800	OXIDOREDUCTASE
	575-650	alignment	5c2nB_302	1-47	0.173900	--
	651-827	alignment	3hnrA_302	1-193	0.422800	TRANSFERASE

Ginzu Domain Prediction 2
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-320	alignment	4ie6A_306	1-447	0.627700	OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
	321-377	msa	4v4nBG_201	1-125	0.079600	--
	378-574	alignment	2xseA_201	1-160	0.846800	OXIDOREDUCTASE
	575-650	msa	5c2nB_302	1-47	0.173900	--
	651-827	alignment	3hnrA_302	1-193	0.422800	TRANSFERASE

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
5689	Leishmania tarentolae	2 (1.18%)	0.0	1-827	1-827	1298	100	827	sp|Q9U6M1.1|JBP1_LEITA	RecName: Full=Thymine dioxygenase JBP1; AltName: Full=J-bind...
347515	Leishmania major strain Friedlin	3 (1.78%)	0.0	1-813	1-813	1273	90	813	ref|XP_001681321.1|	putative DNA J-binding protein [Leishmania major strain Frie...
5661	Leishmania donovani	3 (1.78%)	0.0	1-812	1-812	1270	90	812	ref|XP_003858833.1|	DNA J-binding protein, putative [Leishmania donovani] emb|CB...
435258	Leishmania infantum JPCM5	3 (1.78%)	0.0	1-812	1-812	1267	90	812	ref|XP_001463611.1|	putative DNA J-binding protein [Leishmania infantum JPCM5] s...
929439	Leishmania mexicana MHOM/GT/2001/U1103	3 (1.78%)	0.0	1-812	1-812	1268	88	812	ref|XP_003872831.1|	putative DNA J-binding protein [Leishmania mexicana MHOM/GT/...
420245	Leishmania braziliensis MHOM/BR/75/M2904	3 (1.78%)	0.0	1-810	1-809	1213	85	810	ref|XP_001562766.1|	putative DNA J-binding protein [Leishmania braziliensis MHOM...
5656	Crithidia fasciculata	1 (0.59%)	0.0	1-809	1-809	1148	63	810	sp|Q9U6M2.1|JBP1_CRIFA	RecName: Full=Thymine dioxygenase JBP1; AltName: Full=J-bind...
59799	Angomonas deanei	3 (1.78%)	0.0	1-658	1-664	857	51	670	gb|EPY31569.1|	DNA J-binding protein [Angomonas deanei]
134006	Phytomonas sp. isolate EM1	3 (1.78%)	0.0	1-808	1-802	1114	49	811	emb|CCW64618.1|	unnamed protein product [Phytomonas sp. isolate EM1]
28005	Strigomonas culicis	6 (3.55%)	0.0	1-809	1-808	1080	49	816	gb|EPY25659.1|	DNA J-binding protein [Strigomonas culicis] gb|EPY28890.1| D...
134013	Phytomonas sp. isolate Hart1	3 (1.78%)	0.0	1-808	1-802	1115	48	812	emb|CCW66736.1|	unnamed protein product [Phytomonas sp. isolate Hart1]
5693	Trypanosoma cruzi	9 (5.33%)	0.0	5-808	22-825	1107	47	810	ref|XP_815377.1|	DnaJ chaperone protein [Trypanosoma cruzi strain CL Brener] ...
0	UNIDENTIFIED	13 (7.69%)	0.0	5-808	22-826	1090	47	810	gb|ESS65746.1|	DnaJ chaperone protein [Trypanosoma cruzi Dm28c]
85056	Trypanosoma cruzi marinkellei	3 (1.78%)	0.0	5-808	22-824	1115	46	810	gb|EKF30620.1|	DnaJ chaperone protein, putative [Trypanosoma cruzi marinkel...
1055687	Trypanosoma vivax Y486	3 (1.78%)	0.0	5-809	22-827	1068	44	814	emb|CCC53964.1|	putative DNA J-binding protein [Trypanosoma vivax Y486]
999953	Trypanosoma brucei brucei strain 927/4 GUTat10.1	3 (1.78%)	0.0	16-809	40-835	1046	42	806	ref|XP_829420.1|	chaperone protein DnaJ [Trypanosoma brucei brucei strain 927...
679716	Trypanosoma brucei gambiense DAL972	3 (1.78%)	0.0	16-809	40-835	1046	42	806	sp|P86937.1|JBP1_TRYBB	RecName: Full=Thymine dioxygenase JBP1; AltName: Full=J-bind...
1068625	Trypanosoma congolense IL3000	2 (1.18%)	0.0	225-812	1-592	692	34	607	emb|CCC95890.1|	unnamed protein product [Trypanosoma congolense IL3000]
1073573	SAR324 cluster bacterium JCVI-SC AAA005	1 (0.59%)	9E-32	101-266	130-298	146	27	181	ref|WP_010154308.1|	hypothetical protein [SAR324 cluster bacterium JCVI-SC AAA00...
936435	Serpula lacrymans var. lacrymans S7.3	9 (5.33%)	2E-10	139-243	102-207	76	27	109	gb|EGO02412.1|	hypothetical protein SERLA73DRAFT_158471 [Serpula lacrymans ...