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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780 . 790 . 800 . 810 . 820 . 830
	MKQKRGKQDVKMVESAPPQLLPKKGRLEISELAPQQRTIRTAEEIEMAYNEAVRKHPFYDNADHTIDFHDATVFRDARGVVGGVLLPGALPAFAATMAADVLRPAAVRTSLRSNMFGGFAPLSGIAGYFDYRGSPVELKCRKTSFTYENVHSWPNVFPMIDYVSAIYKAVFPERWAAQDAAVPDIVRIHGSPFSTLTVNQQFRTASHTDAGDFDMGYGLLAVLEGKFEGLSLALDDFGVCFRMQPRDVLIFNTHFFHSNTEPELNHPKDDWSRLTCVCYYRAALGEPACVAEYERRLARAKEIGASPPPAVDAILQKDNGNNFNKPAPTFTYSLTPFGGAASICSLHCCTAKLLRLHELLLENPTLEVILFGESLRTDDGLPRREKEQLISVHLPVVVKMSPSGGFSELGGALKAAEEKQYFFEEKYLADELGPDLMSMWTQSRAHWLRLVKEDWERLCRRDPERTKFTWNNSSAMNAAFFDLCEVAKQMMIGLLNKETPSSAENHSFWILFAAHLNYACTTENGMPRDAVGMHKLNVKLKDFHFGGTRYLKDMPPEEQERRLERKKRIEEARRRGNAARETHTDNWLLNDTFDYQQEDRKVEFEENGWMTPEAYVKHLGLKPCGDVTAAASPTEPIHVLVVLPRPAAAAPKDVKRDVPLATSEESIRLLMNPAAQRVLTGKARNVTLPSPLSFGGVKITVLFDGDDIDCIHPDFVVLQHLLAAIEEDEAAKARVKYWAHVARYCVFVVETDVRDRRHFLLREEVRVAYEDVAEDCFRSLHAAAYSTKCNRLRTTPSLIALSNSKNIGLRFKFRGSPLNTIALIVVGERLD
tmhmm (1)	-------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (8%)	------------------------------------------------------------------------------XXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------------------------XXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (12%)	XXXXXXXXXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXX-XXXXX--------------------------------------------------------XXXXXXXXXXXXXXXXXXXX-X----------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------X
psipred	---------HHHH----HHH--HHHHHHHH-----------HHHHHHHHHHHH----EEE-----------EEEE-----EEEEEEE----HHHHHHHHHHHHHHHH---HHHH---------EEEEHHHH---HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---EEEE------EEEEEEEE---------------EEEEEE-------EEEEHH--EEEE-----EEEEE-HHH------EEE-----EEEEEEEEEEHHH----HHHHHHHHHHHHHHH-----------EEE---------------------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---------------HHHHH------------------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-EEEEE-----EEE-----HHHHHHHHHHHHHHHHHHHH------------HH-----------EEEHHH-----HHHHHHHH-----------------EEEEEE--------------------HHHHHHHHH-HHHHHHHHHHH-------------EEEEEEE------------HHHHHHHH----HHHHHHHHHHHHHHH---EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHH-------EEEEE------EEEEEEEE----
sam	------------------------HHHHHHH---HHHHH--HHHHHHHHHHHHHH--------EEEEE---EEEE----EEEEEEE-----HHHHHHHHHHHHHHHH-----------------EEEEE--------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-----EE----EEEEEE------------------EEEEEEEEEE----HHHHHH--EEEE----EEEEEE-------EEEEEE-----EEEEEEEEEEE--------HHHHHHHHHHHHHH---------EEEEE------------------HHHHHHHHHHHHHHHHHHHHHHHHHH----EEEEE---EEEE----------H-------------------HHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----EEE-------EEEE---HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH---HHHHHHHH---EEEHHH---EEEE----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-----EEE--EEEE---------HH----------------------EEEEEE------------------------------HHHHHHHHH---------------EEEEEEE--------HHHHHHHHHHH--------HHHHHHHHHHH-EEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE--HHHHHHH---EEEEEEEE-------EEEEEE-----
jufo	-----------HH------------HHHHHH-----------HHHHHHHHHHH-----------EEE----EEEE----EEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHH-----------------------EE------------------HHHHHHHHHHHHHHHHHHHHHHHH----EEEEE-----EEEEEHHH--------------EEEEEEEE-----EEEEHHHH-EEEE----EEEEEE--------------------EEEEEEEEHH-------HHHHHHHHHHHHHH---------EEEEE--------------------HHHHHHHHHHHHHHHHHHHHHHHH----EEHHH-------------------HH------EE--------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH---------------HH------------------HHHHHHHHHHHHHHHH-------------------------EEEHHHH-------HHHHH------------------EEEEEEEE--------------------HHHHHH--HHHHHHHHHHH-------------EEEEEEEE----------EEHHHHHHH----HHHHHHHHHHHHHHH-EEEEEEEE----HHHEEHHHHHHHHHHHHHHHHHHHHHHHH-------------HHH-------------------EEEEEEEE----

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    43	    0.158
  max. Y     2	    0.185
  max. S     1	    0.341
  mean S     1-1    0.341
       D     1-1    0.245    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.245 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-70	alignment	5khuX_301	1-396	0.191700	--
	71-316	alignment	5gjaE_304	1-288	0.666300	--
	317-405	alignment	4kqaA_304	1-418	0.098000	--
	406-593	alignment	2xseA_201	1-160	0.835100	OXIDOREDUCTASE
	594-831	alignment	3hnrA_303	1-193	0.419100	TRANSFERASE

Ginzu Domain Prediction 2
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-70	msa	5khuX_301	1-396	0.191700	--
	71-316	alignment	5gjaE_304	1-288	0.666300	--
	317-405	msa	4kqaA_304	1-418	0.098000	--
	406-593	alignment	2xseA_201	1-160	0.835100	OXIDOREDUCTASE
	594-831	alignment	3hnrA_303	1-193	0.419100	TRANSFERASE

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
5693	Trypanosoma cruzi	9 (5.77%)	0.0	1-831	1-831	1282	100	831	ref|XP_815377.1|	DnaJ chaperone protein [Trypanosoma cruzi strain CL Brener] ...
0	UNIDENTIFIED	12 (7.69%)	0.0	1-831	1-832	1240	96	832	gb|ESS65746.1|	DnaJ chaperone protein [Trypanosoma cruzi Dm28c]
85056	Trypanosoma cruzi marinkellei	3 (1.92%)	0.0	1-831	1-830	1251	91	831	gb|EKF30620.1|	DnaJ chaperone protein, putative [Trypanosoma cruzi marinkel...
1055687	Trypanosoma vivax Y486	3 (1.92%)	0.0	5-825	8-826	1136	55	824	emb|CCC53964.1|	putative DNA J-binding protein [Trypanosoma vivax Y486]
999953	Trypanosoma brucei brucei strain 927/4 GUTat10.1	3 (1.92%)	0.0	35-825	41-834	1068	53	800	ref|XP_829420.1|	chaperone protein DnaJ [Trypanosoma brucei brucei strain 927...
679716	Trypanosoma brucei gambiense DAL972	3 (1.92%)	0.0	35-825	41-834	1067	53	800	sp|P86937.1|JBP1_TRYBB	RecName: Full=Thymine dioxygenase JBP1; AltName: Full=J-bind...
59799	Angomonas deanei	3 (1.92%)	0.0	40-692	23-678	875	50	664	gb|EPY31569.1|	DNA J-binding protein [Angomonas deanei]
5656	Crithidia fasciculata	1 (0.64%)	0.0	23-828	6-811	1111	49	811	sp|Q9U6M2.1|JBP1_CRIFA	RecName: Full=Thymine dioxygenase JBP1; AltName: Full=J-bind...
5661	Leishmania donovani	3 (1.92%)	0.0	22-826	5-809	1189	48	813	ref|XP_003858833.1|	DNA J-binding protein, putative [Leishmania donovani] emb|CB...
435258	Leishmania infantum JPCM5	3 (1.92%)	0.0	22-826	5-809	1186	48	813	ref|XP_001463611.1|	putative DNA J-binding protein [Leishmania infantum JPCM5] s...
5689	Leishmania tarentolae	2 (1.28%)	0.0	23-825	6-808	1182	48	811	sp|Q9U6M1.1|JBP1_LEITA	RecName: Full=Thymine dioxygenase JBP1; AltName: Full=J-bind...
347515	Leishmania major strain Friedlin	3 (1.92%)	0.0	22-825	5-808	1181	48	812	ref|XP_001681321.1|	putative DNA J-binding protein [Leishmania major strain Frie...
929439	Leishmania mexicana MHOM/GT/2001/U1103	3 (1.92%)	0.0	23-825	6-808	1181	48	811	ref|XP_003872831.1|	putative DNA J-binding protein [Leishmania mexicana MHOM/GT/...
28005	Strigomonas culicis	6 (3.85%)	0.0	23-827	6-809	1065	48	812	gb|EPY25659.1|	DNA J-binding protein [Strigomonas culicis] gb|EPY28890.1| D...
420245	Leishmania braziliensis MHOM/BR/75/M2904	3 (1.92%)	0.0	23-825	6-807	1147	47	810	ref|XP_001562766.1|	putative DNA J-binding protein [Leishmania braziliensis MHOM...
134006	Phytomonas sp. isolate EM1	3 (1.92%)	0.0	23-829	6-806	1103	47	812	emb|CCW64618.1|	unnamed protein product [Phytomonas sp. isolate EM1]
134013	Phytomonas sp. isolate Hart1	3 (1.92%)	0.0	23-829	6-806	1098	47	813	emb|CCW66736.1|	unnamed protein product [Phytomonas sp. isolate Hart1]
1068625	Trypanosoma congolense IL3000	2 (1.28%)	0.0	243-825	1-587	713	44	595	emb|CCC95890.1|	unnamed protein product [Trypanosoma congolense IL3000]
1168479	Persicivirga phage P12024L	1 (0.64%)	4E-59	67-281	40-262	236	31	227	ref|YP_006560425.1|	hypothetical protein P12024L_26 [Persicivirga phage P12024L]...
1287681	Eutypa lata UCREL1	4 (2.56%)	3E-7	161-258	402-505	65	29	105	gb|EMR62719.1|	hypothetical protein UCREL1_10347 [Eutypa lata UCREL1]