old.robetta.org

A new Robetta server is available for structure prediction.

     
Fragment Libraries    Alanine Scanning    DNA Interface Scan
[ Queue ] [ Submit ]    [ Queue ] [ Submit ]    [ Queue ] [ Submit ]
[ Register / Update ] [ Docs / FAQs ] [ Login ]


     
Job 79422 [SSGCID - LebrA.19530.a] [2017-11-20] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] J-binding protein 1 (JBP1) - BATCH:79386

Features and Secondary Structure  
 
1   .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .  620    .  630    .  640    .  650    .  660    .  670    .  680    .  690    .  700    .  710    .  720    .  730    .  740    .  750    .  760    .  770    .  780    .  790    .  800    .  810 
 
MESSTKRIKMDIFNFPTIKETRTPEEVAESYAEAVKLHPFYDNAHCVIDFYDSGTIKDGRGEIIGVVLRKALPKYATSMASALLISAAVRTSLRSMIFGGESPLSGIAGYFDYRGSPVELKSRKTSFTYEHEEAWSAVFPVVDYVSEIYRHVAPERWKAQNNAIPDLVRIHGTPFSTLTINSRFRTASHTDVGDFDAGYSCIACIDGKFKGLALTFDDFRINVLMQPRDVMVFDSHHFHSNTEVEVSCSEEDWKRLTCVFYYRTALGEPSSYAEYRRRLEKSKQDPSFTPVVSNVMMKENGTNLNRPSPVHPVPPSPFWLPMLAHCLQHCASAAQSVHEAMTADGSQLAEIIFGEPLSTSDGIPLRGDDEKLKANGDTGAKPLSRLGGFSETDLMVSTAAEKRKYLDSEFLSHCISAQLLDMWKQARARWLELVGKEWKHMLTLNPERKDFLWKNRSEMNSAFFDLCEVGKQVMLGLLDKEAALPKEEQAFWTMYAVHLSAACAEELHMPHDAMSLRKLNVKLKDFNFGGTRYFKDMPPEEQQRRMERKQRIEEARRHGMTGAHEKRANWLTNDSFDYQTEDCVVDYAKHKWVLPERHAKAVTKNVHTAWLPTREEVVRVLVVLPDLQIRVEGVDCKLEKPDTVEDSSEWVRLVSSPAVHRLLAAAQRNLQLPDDVMHGNIHIRFVFHSTLPTDMYDFVVLQHVLSRIPDDVLASSYITRAAALCSGCLFVEETDVQCRQYYTLKYSIRRNYDAVAPHFFQQLHQASYGTKMARVRTKGELEALIPTVCCARYKLQGSPLNTTIHVVSPTAPH
tmhmm (0)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (6%)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXX-----------------------------------------------------------XXXXXXXXXXX------------------------------------XXXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (11%)
XXXXXX-XXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------XXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------X----------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXX
psipred
---------EE------------HHHHHHHHHHHHHH---------EEEE----EEE-----EEEEEE-----HHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHH------HH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----EEEE-----EEEEE------------------EEEEEEEE-----EEEEE----EEEE-----EEEEE--HH-----EEE------EEEEEEEHHHHHHH-----HHHHHHHHHHHHH-------HHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---------------HHHH--------------------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-EEEEE-----EEE-----HHHHHHHHHHHHHHHHHHHH-------------------------EEEHHH-----HHHHHHHHH--------------EEEEEE-----------------------HHHHHHHHH-HHHHHHHH----------------EEEEEEE-------HHHHHHHHHHHHH---HHHHHHHHHHHHHHH---EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH----HHHHHH---HHHEEEE-------EEEEEE------

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    61	    0.110
  max. Y     2	    0.114
  max. S     1	    0.129
  mean S     1-1    0.129
       D     1-1    0.122    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.122 D-cutoff=0.450 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-298     alignment     4ie6A_307     1-447   0.587900   OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
  299-381     alignment     4v4nBG_201     1-125   0.085200   --
  382-568     alignment     2xseA_201     1-160   0.850500   OXIDOREDUCTASE
  569-645     alignment     1kviA_101     1-79   0.106000   HYDROLASE
  646-813     alignment     3hnrA_302     1-193   0.427500   TRANSFERASE

Ginzu Domain Prediction 2     Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-298     alignment     4ie6A_307     1-447   0.587900   OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
  299-381     msa     4v4nBG_201     1-125   0.085200   --
  382-568     alignment     2xseA_201     1-160   0.850500   OXIDOREDUCTASE
  569-645     msa     1kviA_101     1-79   0.106000   --
  646-813     alignment     3hnrA_302     1-193   0.427500   TRANSFERASE


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
420245Leishmania braziliensis MHOM/BR/75/M29043 (1.7%)0.01-8131-8131257100813ref|XP_001562766.1|putative DNA J-binding protein [Leishmania braziliensis MHOM...
5661Leishmania donovani3 (1.7%)0.01-8121-813126085813ref|XP_003858833.1|DNA J-binding protein, putative [Leishmania donovani] emb|CB...
435258Leishmania infantum JPCM53 (1.7%)0.01-8121-813125784813ref|XP_001463611.1|putative DNA J-binding protein [Leishmania infantum JPCM5] s...
347515Leishmania major strain Friedlin3 (1.7%)0.01-8111-812124984812ref|XP_001681321.1|putative DNA J-binding protein [Leishmania major strain Frie...
5689Leishmania tarentolae2 (1.14%)0.01-8111-812124684812sp|Q9U6M1.1|JBP1_LEITARecName: Full=Thymine dioxygenase JBP1; AltName: Full=J-bind...
929439Leishmania mexicana MHOM/GT/2001/U11033 (1.7%)0.01-8121-813125283813ref|XP_003872831.1|putative DNA J-binding protein [Leishmania mexicana MHOM/GT/...
5656Crithidia fasciculata1 (0.57%)0.01-8081-809113064810sp|Q9U6M2.1|JBP1_CRIFARecName: Full=Thymine dioxygenase JBP1; AltName: Full=J-bind...
59799Angomonas deanei3 (1.7%)0.03-6574-66484852666gb|EPY31569.1|DNA J-binding protein [Angomonas deanei]
28005Strigomonas culicis6 (3.41%)0.01-8081-808106750817gb|EPY25659.1|DNA J-binding protein [Strigomonas culicis] gb|EPY28890.1| D...
134006Phytomonas sp. isolate EM13 (1.7%)0.01-8071-802110849810emb|CCW64618.1|unnamed protein product [Phytomonas sp. isolate EM1]
134013Phytomonas sp. isolate Hart13 (1.7%)0.01-8071-802110849811emb|CCW66736.1|unnamed protein product [Phytomonas sp. isolate Hart1]
5693Trypanosoma cruzi9 (5.11%)0.05-80722-825109647811ref|XP_815377.1|DnaJ chaperone protein [Trypanosoma cruzi strain CL Brener] ...
0UNIDENTIFIED13 (7.39%)0.05-80722-826107546811gb|ESS65746.1|DnaJ chaperone protein [Trypanosoma cruzi Dm28c]
85056Trypanosoma cruzi marinkellei3 (1.7%)0.06-80723-824110045810gb|EKF30620.1|DnaJ chaperone protein, putative [Trypanosoma cruzi marinkel...
1055687Trypanosoma vivax Y4863 (1.7%)0.01-80918-828106544819emb|CCC53964.1|putative DNA J-binding protein [Trypanosoma vivax Y486]
679716Trypanosoma brucei gambiense DAL9723 (1.7%)0.013-81137-838103443811sp|P86937.1|JBP1_TRYBBRecName: Full=Thymine dioxygenase JBP1; AltName: Full=J-bind...
999953Trypanosoma brucei brucei strain 927/4 GUTat10.13 (1.7%)0.013-81137-838103343811ref|XP_829420.1|chaperone protein DnaJ [Trypanosoma brucei brucei strain 927...
1068625Trypanosoma congolense IL30002 (1.14%)0.0225-8121-59269635604emb|CCC95890.1|unnamed protein product [Trypanosoma congolense IL3000]
1168479Persicivirga phage P12024L1 (0.57%)9E-6545-28727-28325527264ref|YP_006560425.1|hypothetical protein P12024L_26 [Persicivirga phage P12024L]...
1073573SAR324 cluster bacterium JCVI-SC AAA0051 (0.57%)7E-37101-266130-29816226176ref|WP_010154308.1|hypothetical protein [SAR324 cluster bacterium JCVI-SC AAA00...






Robetta is available for NON-COMMERCIAL USE ONLY at this time
[ Terms of Service ]
Copyright © 2004-2011 University of Washington