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Job 79424 [SSGCID - LeinA.19530.a] [2017-11-20] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] J-binding protein 1 (JBP1) - BATCH:79386

Features and Secondary Structure  
 
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MEPDPKKVKLDIFDFPTARETRTPEEVAESYAEAVKSHPFYDNVHSAIDFYDSGTIKDGRGQIIGVVLREALPKYAASMASELLASAAVRTSLRSMMFGGESPLSGIAGYFDYRGSPVELKSRKTSFTYEHEAAWPAVFPVVDYVSELYRHVAPERWKAQNDAIPDVVRIHGTPFSTLTINSRFRTASHTDVGDFDGGYSCIACLDGQFKGLALAFDDFGINVLMQPRDVMIFDSHHFHSNTEVELSFSGEDWKRLTCVFYYRAALGEPASYAEYRRRLEKSKQDTSFTPVVSNVRVKENGTNLNRPSPVYPIFLSPFWVPMVAHCLQHCASEAQCVHDAMTADGSRLAEVMFGEPLSTSDGIPLRGEEEKLKANSDSASRPLSRLGGFSETNLMVSTAVEKKKYLNSEFLSHFISAQLLDMWKQARGKWLELVGREWTHMLALNPERKDFLWRNQSEMNSAFFDLCEVGKQVMLGLLGKEAALPKEEQAFWTMYAVHLNAACAEELNMPHVAMSLRKLNVKLKDFNFGGTRYFKDMPPEEQKRRMERKQRIEEARRHGMSSGAHEKRANWLTNDSFDYQTEDCVFDYAQHKWVPPALHAKEITKNVRSGELPTREGVVRVLVVLPDPQSKVDCVDCKLEVSETVRCSCEWERLMSSPAVHRVLAAAQRNLQLPDSVTHDNIEIRFAFHSRLPTDMCDFVVLQHVLSCIPDDVLASAYIRRSAALCSGCVFVVETDVQCRQYYTLKCSVRCDYDAVAPLFFQQLHRVSYGTKAARVRTKGELESLIPTVCCARYKLQGSPLNTTVHVVAPAPPR
tmhmm (0)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (4%)
---------------------------------------------------------------------------XXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (12%)
XXXXXX-XXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXX--XXXX------------------------------------------------------------XXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------XX--X-------------------------------------------------------------------------------------------------------------------------------------------------------------------XXX
psipred
---------EEEE----------HHHHHHHHHHHHH----------EEEEE----------EEEEEEE-----HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH------HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---EEEE------EEEEE------------------EEEEEEE------EEEEHH---EEE-----EEEEE-HHH-----EEE------EEEEEEEEEEHHH------HHHHHHHHHHHHH------HHHHHHH--------------------HHHHHHHHHHHHHHHH---EEHHHH----HHHHHH---------------HHHH--------------------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-EEEEE-----EEE-----HHHHHHHHHHHHHHHHHHH---------------------------EEEHHH-----HHHHHHHH---------------EEEEEE-----------------------HHHHHHHHH-HHHHHHHHH---------------EEEEEEE-----------HHHHHHHH---HHHHHHHHHHHHHHHH---EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHH--------EEEEEE------

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    61	    0.111
  max. Y     4	    0.107
  max. S    30	    0.117
  mean S     1-3    0.105
       D     1-3    0.106    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.106 D-cutoff=0.450 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-306     alignment     4ie6A_305     1-447   0.590300   OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
  307-376     alignment     4v4nBG_201     1-125   0.072500   --
  377-567     alignment     2xseA_201     1-160   0.846800   OXIDOREDUCTASE
  568-648     alignment     2o4eA_201     1-165   0.147100   PROTEIN BINDING
  649-814     alignment     5f8eA_301     1-354   0.489300   --

Ginzu Domain Prediction 2     Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-306     alignment     4ie6A_305     1-447   0.590300   OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
  307-376     msa     4v4nBG_201     1-125   0.072500   --
  377-567     alignment     2xseA_201     1-160   0.846800   OXIDOREDUCTASE
  568-648     msa     2o4eA_201     1-165   0.147100   --
  649-814     alignment     5f8eA_301     1-354   0.489300   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
5661Leishmania donovani3 (1.76%)0.01-8141-8141309100814ref|XP_003858833.1|DNA J-binding protein, putative [Leishmania donovani] emb|CB...
435258Leishmania infantum JPCM53 (1.76%)0.01-8141-8141307100814ref|XP_001463611.1|putative DNA J-binding protein [Leishmania infantum JPCM5] s...
347515Leishmania major strain Friedlin3 (1.76%)0.01-8141-814129296814ref|XP_001681321.1|putative DNA J-binding protein [Leishmania major strain Frie...
929439Leishmania mexicana MHOM/GT/2001/U11033 (1.76%)0.01-8131-813128792813ref|XP_003872831.1|putative DNA J-binding protein [Leishmania mexicana MHOM/GT/...
5689Leishmania tarentolae2 (1.18%)0.01-8121-812127790812sp|Q9U6M1.1|JBP1_LEITARecName: Full=Thymine dioxygenase JBP1; AltName: Full=J-bind...
420245Leishmania braziliensis MHOM/BR/75/M29043 (1.76%)0.01-8131-812122484813ref|XP_001562766.1|putative DNA J-binding protein [Leishmania braziliensis MHOM...
5656Crithidia fasciculata1 (0.59%)0.01-8091-809114264810sp|Q9U6M2.1|JBP1_CRIFARecName: Full=Thymine dioxygenase JBP1; AltName: Full=J-bind...
59799Angomonas deanei3 (1.76%)0.01-6581-66485452669gb|EPY31569.1|DNA J-binding protein [Angomonas deanei]
28005Strigomonas culicis6 (3.53%)0.01-8091-808106649818gb|EPY25659.1|DNA J-binding protein [Strigomonas culicis] gb|EPY28890.1| D...
134013Phytomonas sp. isolate Hart13 (1.76%)0.01-8081-802110548813emb|CCW66736.1|unnamed protein product [Phytomonas sp. isolate Hart1]
134006Phytomonas sp. isolate EM13 (1.76%)0.01-8081-802110548811emb|CCW64618.1|unnamed protein product [Phytomonas sp. isolate EM1]
5693Trypanosoma cruzi9 (5.29%)0.05-80822-826108848812ref|XP_811851.1|DnaJ chaperone protein [Trypanosoma cruzi strain CL Brener] ...
0UNIDENTIFIED16 (9.41%)0.05-80822-826107348812gb|ESS65746.1|DnaJ chaperone protein [Trypanosoma cruzi Dm28c]
85056Trypanosoma cruzi marinkellei3 (1.76%)0.06-80823-824109447811gb|EKF30620.1|DnaJ chaperone protein, putative [Trypanosoma cruzi marinkel...
1055687Trypanosoma vivax Y4863 (1.76%)0.03-81019-828106346818emb|CCC53964.1|putative DNA J-binding protein [Trypanosoma vivax Y486]
679716Trypanosoma brucei gambiense DAL9723 (1.76%)0.025-81249-838103544800sp|P86937.1|JBP1_TRYBBRecName: Full=Thymine dioxygenase JBP1; AltName: Full=J-bind...
999953Trypanosoma brucei brucei strain 927/4 GUTat10.13 (1.76%)0.025-81249-838103444800ref|XP_829420.1|chaperone protein DnaJ [Trypanosoma brucei brucei strain 927...
1068625Trypanosoma congolense IL30002 (1.18%)0.0225-8141-59369034609emb|CCC95890.1|unnamed protein product [Trypanosoma congolense IL3000]
1287681Eutypa lata UCREL14 (2.35%)7E-7148-240404-5026330100gb|EMR64486.1|hypothetical protein UCREL1_8553 [Eutypa lata UCREL1]
1168479Persicivirga phage P12024L1 (0.59%)4E-6445-28727-28325326264ref|YP_006560425.1|hypothetical protein P12024L_26 [Persicivirga phage P12024L]...






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