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Job 79431 [SSGCID - TrbrA.19528.a] [2017-11-20] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] J-binding protein 2 (JBP2) - BATCH:79431

Features and Secondary Structure  
  
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MPMFMDGASQVLQQVLQTVLVTSEPAIVIPGSFLGELDVIVDEAKNHGMKLVSIPKGGITILPPIPMSESSLTRLCKDYYGLKTDAERLALFSNLEETFPTAPGVSLPCRLLYHPRDYICRIVHLCAELVTASDEEYQKAYDIVPLLHIRPVQNVCEELRRQFRAGALTQRLPLGQRVDVQFKRTVVHLDGSMDPFPRNAAEAAVNIAPVALDAVDDIYEGFDVTGTEVVDIPTGKVSEYLSEKDFELVTEDSVLLDPTGKRVQAIFIRGGIDKDICRRAAADVEGVATKQNMRRLTNGGVRNPDTGILGYYDYLNNPTKRKCRMTEFTRRNWGKIIGPCGELLQLLDQLYKENAPDHYELQRRVIPPEYMLFNTVFSTVSVNKNFRTAVHRDKGDFRGGLTALCVLDGNYEGCYLALKSARKAFCLQVGDVLFFDSSLEHGNTEVHNREGSWRRISIVCYLRCGLMSHTCETERSMRLRNQIMSDRLHADSADSVVNLNGVTGHLPPLCIPFKIAKTLSLTQHAALRFVSRRIKEGDGCVLALTMGLGKTLVSLTICYSYIYNNGPCDILIVAPKTLLQHWMQEAKKWKDYGLVFPGFIVLNNVDSSSFEDDLSNYEQQGTTTNPKKSYVFVINPGYIKSFLSRVKGFRPALIVVDEGHCISSKESKLREVLDSLYCSARVVLTGTPVQNNAEELYRLVGWVDDKVHSTLPQRDFNEFSNSINRYVNGDDSAFCDALFAQRYIHEWMSPYVFTVMKVDLPPLHDYIIICNFSAVQQKMFEERIKVDATDNLLCLKASEHRPYHLSTHPLCFLGFLTGIWRTGQVDIEEEPGEFEELGTYRLSRDDDALAKDCSSLLENGKLADFVALSGKLTALISILHSIFEKMEKAVIFSQYIGSQDFIARTLTAYKISVVTIRGKDCQQRRRRVVEMFRDDKNVLCLVVSTQIGAYGLDLTAANHVILWDTWWNPQVESQAIARCYRQNQSKAVIAYKLASGFEDATVLKAQARKRALFKCLINEETSQVVPGHDLVDYTSSEEDDDRRHLWETLKTCTLEGGKPAVTKIIRNIDTVKSERWI
tmhmm (0) 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (3%) 
---------XXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%) 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (20%) 
XXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXX---XX---XXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------X-X-XXXXX----------------------------------------------------------------------------------------------------------------------------------------------XXX-----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------XXXXXXXXX----------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXX----------------------------------------------XXXXXXXXXXXXXXXXXXXXXX--------------------------XXXXXXXXXX--------------------------------------------------------------------------------XXXXXXXXX--------------------------------------------------------------------------------------XXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXX
psipred 
-------HHHHHHHHHHHHHH----EEEE------HHHHHHHHHHH---EEEE-----EEE-------HHHHHHHHHHHHHH---HHHHHHHHHHHHHH--------HHHHH--HHHHHHHHHHHHHHHH---HHHHHHHHHH-------HHHHHHHHHHHHHH-------------HHH-----------------------------HHHHHHHHH---------------HHHHHHHHH-----------EEE-----EEEEEE-----HHHHHHHHHHHH----HHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--EE-HHHH--HHHHHH---------------------HHHHHHHHHH---EEE-----EEE--HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH------------HHH-----HHHHHHHHHHHHHHH-----EEE------HHHHHHHHHHHHHHH-----EEEE----HHHHHHHHHHHH---------EEEEE----HHHHHHHHHHHHHHHH-------EEE--HHHHHHHHHHHH-----EEEEE-HHH------HHHHHHH------EEEEE-------HHHHHHHHHHH-------HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH--HHHHHHHHH----EEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH---HHHHH--------------------------HHHHHH--HHHHHHHHHHHHHHH---EEEEEE--HHHHHHHHHHHHH----EEEEE----HHHHHHHHHH--------EEEEE---------------EEE------HHHHHHHHHHHHH------EEEEE-----HHHHHHHHHHHHHHHHHHHH---------HHHHHHHH----HHHHHHHHHHHHHHHH----HHHHHHHHHHHH-------

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    24	    0.126
  max. Y     3	    0.198
  max. S     1	    0.382
  mean S     1-2    0.359
       D     1-2    0.285    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.285 D-cutoff=0.450 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1     Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-308     alignment     3zrpA_106     1-377   0.174700   TRANSFERASE
  309-421     alignment     4nm6A_301     1-407   0.718800   --
  422-507     alignment     3nnfA_302     1-318   0.275200   BIOSYNTHETIC PROTEIN
  508-1077     alignment     5x0xO_301     1-583   0.521000   --

Ginzu Domain Prediction 2     Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-197     cutpref     --     --   0.000000   --
  198-308     cutpref     --     --   0.000000   --
  309-421     alignment     4nm6A_301     1-407   0.718800   --
  422-507     alignment     3nnfA_302     1-318   0.275200   BIOSYNTHETIC PROTEIN
  508-1077     alignment     5x0xO_301     1-583   0.521000   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
679716Trypanosoma brucei gambiense DAL9721 (0.03%)0.01-10771-107711891001077emb|CBH12615.1|SNF2 DNA repair protein, putative [Trypanosoma brucei gambie...
999953Trypanosoma brucei brucei strain 927/4 GUTat10.14 (0.1%)0.01-10771-107711891001077ref|XP_846088.1|SNF2 DNA repair protein [Trypanosoma brucei brucei strain 92...
0UNIDENTIFIED64 (1.6%)0.01-10761-10851056561087gb|ESS65612.1|SNF2 DNA repair protein [Trypanosoma cruzi Dm28c]
5693Trypanosoma cruzi3 (0.08%)0.01-10761-10851056561087gb|EKF98730.1|SNF2 DNA repair protein, putative [Trypanosoma cruzi]
85056Trypanosoma cruzi marinkellei1 (0.03%)0.01-10761-10841025561087gb|EKF28363.1|SNF2 DNA repair protein, putative [Trypanosoma cruzi marinke...
1055687Trypanosoma vivax Y4861 (0.03%)1E-1735-5746-56761751574emb|CCC49143.1|putative SNF2 DNA repair protein, fragment [Trypanosoma viva...
59799Angomonas deanei1 (0.03%)1E-154293-10521-75555345764gb|EPY28945.1|DNA repair and recombination protein RAD54B [Angomonas deane...
347515Leishmania major strain Friedlin12 (0.3%)0.075-10731-1020882441025ref|XP_001687603.1|putative j-binding protein [Leishmania major strain Friedlin...
929439Leishmania mexicana MHOM/GT/2001/U11031 (0.03%)0.075-10731-1020874441025ref|XP_003873375.1|putative j-binding protein [Leishmania mexicana MHOM/GT/2001...
435258Leishmania infantum JPCM511 (0.28%)0.075-10731-1020866441025ref|XP_001464187.1|putative j-binding protein [Leishmania infantum JPCM5] emb|C...
5661Leishmania donovani1 (0.03%)0.075-10731-1020866441025ref|XP_003859376.1|j-binding protein, putative [Leishmania donovani] emb|CBZ326...
5689Leishmania tarentolae1 (0.03%)0.08-107310-1096971431092sp|B6EU02.1|JBP2_LEITARecName: Full=Bifunctional helicase and thymine dioxygenase ...
420245Leishmania braziliensis MHOM/BR/75/M290410 (0.25%)0.08-107510-1098966431094ref|XP_001562198.1|putative j-binding protein [Leishmania braziliensis MHOM/BR/...
134006Phytomonas sp. isolate EM11 (0.03%)0.05-10735-1076959431088emb|CCW64034.1|unnamed protein product [Phytomonas sp. isolate EM1]
134013Phytomonas sp. isolate Hart11 (0.03%)0.03-10731-1078930431091emb|CCW69781.1|unnamed protein product [Phytomonas sp. isolate Hart1]
28005Strigomonas culicis4 (0.1%)0.05-10721-1074968421087gb|EPY21080.1|DNA repair and recombination protein RAD54B [Strigomonas cul...
9315Macropus eugenii1 (0.03%)2E-40838-10531957-219817526242gb|AAS99124.1|alpha thalassaemia mental retardation X-linked protein [Macr...
296543Thalassiosira pseudonana CCMP13355 (0.13%)1E-121492-10396-53444323558ref|XP_002286143.1|rad54-like protein [Thalassiosira pseudonana CCMP1335] gb|EE...
1071782Chlamydia trachomatis L2b/Ams51 (0.03%)1E-106487-1035668-116239323552ref|YP_001653180.1|putative helicase [Chlamydia trachomatis L2b/UCH-1/proctitis...
1007870Chlamydia trachomatis RC-L2/551 (0.03%)1E-106487-1035668-116239323552ref|YP_001654168.1|helicase [Chlamydia trachomatis 434/Bu] ref|YP_007716238.1| ...



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