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Job 79434 [SSGCID - LemaA.19528.a] [2017-11-20] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] J-binding protein 2 (JBP2) - BATCH:79431

Features and Secondary Structure  
  
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MLNGLTRVSTSSELESILDIVQSSGEIAVVFTSPSIGDLETIASETQRRQLRIAGIPRGGYTILPAIPLYDDELLQMCERYTAANEYEKAEMRNSLYMREYPLFAYSMRHQRALFHPADYVSRILQFCSYYVQAPDADVLSLQDRSPFLHISPIKEICTQLRLIARGTPVAASDSESPVPEQLRLHAESDVEKLAAERATAMSIAASSGGASETEQLSLFSGVAPSALFQKDAVEEVNKDAEDTMEDLTGEETVDAVHSFQAEYLTLDGFELVTKASIFYDREGEGQCIVAVYIPGGVPEDTCRAAAAVLEPAATKKNLRAPTNGGLPPDTGIVGYYDYLTNPTQHKCRETEFSRRNWGLLAQSEPLLKHLDKLYSQLAPMHHHLQRVAIPSQYQLCGTVFSTITVNRNFRTAVHTDRGDFRSGLGVLSVINGEFEGCHLAIKRLKKAFQLKVGDVLLFDTSLEHGNTEVVNPEIHWQRTSVVCYLRTGLMSSVCEMERRKHLNRLILEQLLNTEVRNTTVNINGADSSLPPLFVPTRLASHLAPVQLAALGFIVERTEKQSGCVVAMTMGLGKTLVALTLCFSQLYLAPQADILILTPKPIISHWVDEKNKWGMHGLHFPHFVASDGLNSLEFEQQLLEYERQKNNEKPKSGHIFVINGEYLAGFLRRFKRFTPLVMIVDEGHRVAAKGNKLTESLDRLRCNLRIVLSGTPLQNDASELYRLVGWVNKGVSRVLPPKRFQELANDINQFVEGDDGAFYNAVVAQEYIQDWMRGFVFREMENDLPPLHDYLLICGSSDVQREYEEKLGLTETAMTALKATEHRPHHLSTHPACYLAFISDSYQSMVSGWTVRALSNTSRQRVSQLEEIDTMRLEQYVQLVENEQLDAFIDLSGKMRVLVDIVLRVQARKEKLIVFSLYVGSQDLIHRTLTALRVCTFTVRGRDSQDRRRRAMQEFSENKDLIVLVLSTKIAAYGLDFTAANHVVLFDSWWNPQVDAQAIARAYRRNQRKPVTVYRLISATENKFVLRSQTRKIALFKCILHERTSRQALPDELEDCAANEKDEERRNFWAKLKMTSLAGDTRALLNVYRYQESVRESE
tmhmm (0) 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (3%) 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (2%) 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (21%) 
XXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------XX-XXXXXXXXXXXXXXXX-XX-----XXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXX----------------------------------------------------------------------------------------XXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------XXXXXXXXXXXXX--------------------XXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------X-------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----X-XXXXXX
psipred 
------EEEHHHHHHHHHHHHHH----EEEE------HHHHHHHHHHH---EEE------EEE--------HHHHHHHHHHH---HHHHHHHHHHHHHH---------HHHHH----HHHHHHHHHHHHHH----HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH-------EEE---HHHHHHH----------------HHH----------HHHHH-----HHHH--HHHHHHH--HHHHH---HHHHHH-------------HH--------EEEEEE-----HHHHHHHHHHH-------HHHHHHH------------HHHH---HHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--HHHHH--EE---EEE-------------HHH---------HHHHHHHHHHHHHHHHHH------EEE--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHH--------------HHH-----HHHHHHHHHHHHHHH----EEEE------HHHHHHHHHHHHHHH-----EEEEE-HHHHHHHHHHHHHH----EEEEEE-------HHHHHHHHHHHHHHH---------EEE-HHHHHHHHHHHHH-----EEEEE-HHHH-----HHHHHHHH---EEEEEE--------HHHHHHHHHHHH-------HHHHHHHH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------EEEEEEE---HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--HHH---------HHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHH----EEEEE-HHHHHHHHHHHHHH----EEEE-----HHHHHHHHHH--------EEEEE--------------EEEE------HHHHHHHHHHHHHH----EEEEEE-----HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH----HHHHHHHHHH--------HHHHHHHHHHHHHHH---

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    24	    0.141
  max. Y    24	    0.148
  max. S    22	    0.232
  mean S     1-23   0.162
       D     1-23   0.154    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.154 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1     Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-328     alignment     2dr1A_107     1-381   0.145800   Transferase
  329-444     alignment     5d9yA_301     1-413   0.699100   --
  445-524     alignment     4e4hA_101     1-455   0.275000   OXIDOREDUCTASE
  525-1098     alignment     5x0xO_301     1-583   0.511100   --

Ginzu Domain Prediction 2     Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-211     cutpref     --     --   0.000000   --
  212-268     cutpref     --     --   0.000000   --
  269-328     cutpref     --     --   0.000000   --
  329-444     alignment     5d9yA_301     1-413   0.699100   --
  445-524     alignment     4e4hA_101     1-455   0.275000   OXIDOREDUCTASE
  525-1098     alignment     5x0xO_301     1-583   0.511100   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
0UNIDENTIFIED55 (1.38%)0.01-10981-109811581001098sp|Q4QFY1.2|JBP2_LEIMARecName: Full=Bifunctional helicase and thymine dioxygenase ...
347515Leishmania major strain Friedlin10 (0.25%)0.077-10981-102210401001022ref|XP_001687603.1|putative j-binding protein [Leishmania major strain Friedlin...
435258Leishmania infantum JPCM58 (0.2%)0.077-10981-10221000971022ref|XP_001464187.1|putative j-binding protein [Leishmania infantum JPCM5] emb|C...
5661Leishmania donovani2 (0.05%)0.077-10981-10221000971022ref|XP_003859376.1|j-binding protein, putative [Leishmania donovani] emb|CBZ326...
929439Leishmania mexicana MHOM/GT/2001/U11032 (0.05%)0.077-10981-10221004961022ref|XP_003873375.1|putative j-binding protein [Leishmania mexicana MHOM/GT/2001...
5689Leishmania tarentolae1 (0.03%)0.01-10981-10981109941098sp|B6EU02.1|JBP2_LEITARecName: Full=Bifunctional helicase and thymine dioxygenase ...
420245Leishmania braziliensis MHOM/BR/75/M29049 (0.22%)0.01-10981-10981109901098ref|XP_001562198.1|putative j-binding protein [Leishmania braziliensis MHOM/BR/...
134006Phytomonas sp. isolate EM11 (0.03%)0.01-10981-1078932531102emb|CCW64034.1|unnamed protein product [Phytomonas sp. isolate EM1]
28005Strigomonas culicis4 (0.1%)0.012-10986-1077940511097gb|EPY21080.1|DNA repair and recombination protein RAD54B [Strigomonas cul...
134013Phytomonas sp. isolate Hart11 (0.03%)0.05-10982-1080912511100emb|CCW69781.1|unnamed protein product [Phytomonas sp. isolate Hart1]
85056Trypanosoma cruzi marinkellei1 (0.03%)0.012-10959-1080930481099gb|EKF28363.1|SNF2 DNA repair protein, putative [Trypanosoma cruzi marinke...
59799Angomonas deanei1 (0.03%)1E-143319-10901-77251848779gb|EPY28945.1|DNA repair and recombination protein RAD54B [Angomonas deane...
5693Trypanosoma cruzi3 (0.07%)0.012-109510-1081940471099gb|EKF98730.1|SNF2 DNA repair protein, putative [Trypanosoma cruzi]
679716Trypanosoma brucei gambiense DAL9721 (0.03%)0.010-10958-1072886431091emb|CBH12615.1|SNF2 DNA repair protein, putative [Trypanosoma brucei gambie...
999953Trypanosoma brucei brucei strain 927/4 GUTat10.14 (0.1%)0.010-10958-1072885431091ref|XP_846088.1|SNF2 DNA repair protein [Trypanosoma brucei brucei strain 92...
1055687Trypanosoma vivax Y4861 (0.03%)1E-1561-6051-58856143623emb|CCC49143.1|putative SNF2 DNA repair protein, fragment [Trypanosoma viva...
287Pseudomonas aeruginosa1 (0.03%)8E-99532-1052291-75936922523ref|WP_009875983.1|helicase [Pseudomonas aeruginosa] gb|ERU69143.1| helicase [P...
350703Pseudomonas aeruginosa 21921 (0.03%)2E-98532-1052181-64936822523ref|WP_004353123.1|helicase [Pseudomonas aeruginosa] gb|EAZ62493.1| hypothetica...
350704Pseudomonas aeruginosa C37191 (0.03%)1E-98532-1052181-64936822523ref|WP_004348251.1|helicase [Pseudomonas aeruginosa] gb|EAZ56599.1| hypothetica...
1163396Pseudomonas aeruginosa CI271 (0.03%)1E-98532-1052181-64936822523ref|YP_792483.1|helicase [Pseudomonas aeruginosa UCBPP-PA14] ref|WP_00314091...



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