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Job 79437 [SSGCID - TrcrB.19528.b] [2017-11-20] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] J-binding protein 2 (JBP2) - BATCH:79431

Full Structure Predictions  
Model 1

chemical/x-pdb MIME type  PDB file 		Model 2

chemical/x-pdb MIME type  PDB file 		Model 3

chemical/x-pdb MIME type  PDB file 		Model 4

chemical/x-pdb MIME type  PDB file 		Model 5

chemical/x-pdb MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

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Features and Secondary Structure  
  
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MPVPSHVSVATLQSVLQTVCSTGEPAIIAPSSFLGELDTVVDEVKRHGMKLASIPHGGITILPPVPISGTELFDFCAEYCKAQTHEERLAVRHKINNHNFLMQDPLLRMPCRQLYNPADYVLRIVHLCSELVSASEEEYHGAYGVAPLLHINPVQDVCGKLRSMFQSGSLYVKPWILEEEEERREMDESNRGVLFNSDSFGNGRGGSSISSSERSVDENDVADEDLTGEEVVDNATDTVVEYLSEKDFDVVTESGIFYDDSGERVHAIYLRGGIKKELCQRAAIAIEEAATTKNLRKAVNGGKTNPETGIVGYYDYLNNPTQRKCRETEFTRKNWSSVVDSCEPFLVALNKLYSECAPTHYKLQRIAIPHHYQLFNTVFSTMTVNRNFRTAVHTDRGDFRSGLAALCVIDGVFEGCHLAIKKLGKAFRLETGDVLFFDTSLEHGNTEVHNFDYCWKRVSVVCYLRNGLMSQICEMERRRWLQKQMLKQRLLDRSRQSVINLNATDPNLPPIYLPGRLLEVLSPVQQAALGFVVDRLSKGNGCVIALTMGLGKTLLSLALCYSHMYDQNPRDVLILAPKIVLTHWTGEKQKWEKYGLVFSHFVVSDGTDSVSFEIALKRYKQQLNGELPRTSHVFVINPEYIRTVLKKLTGFRPSLIIVDEGHRVSSKGSKLKDWLEGLRCTARVILSGTPVQNNAEELYRLIGWINSDVHSVLPPRVFTDLAGTINRYINGDDSALAAAVSAQRYIQEWMCSYVFSVMKTDLPPLNDYIIICGFSSIQRKMLEDHFGMEGIDGLTSIKASEHRPYHLSTHPLCFLGFISGVYKSLNGNHKLTPEAEEELESQEYASQLYSLTEDDIGLIDECLSLVNSGFLTEFVGLSGKMTVLISILHSIREKKEKAIIFSQYVGSQDFISRTLTSFDIVSSTIRGRDCHERRRRTIEKFREDEKITCLLLSTQIGAYGLDFTAANHVILWDSWWNPQVESQAIARAYRRNQTRAVIVYRLASEFEDTIVLKTQIRKLALFRCIMNEEASRAVPPEELLDCVDTEEDEGRRFLWRSLKKSYLEGGAPAVSKVFRHGDTVRSESWS
tmhmm (0) 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (5%) 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXX-------------XXXXXXXXXXXXXXXXX------------------------------------------------------------------XXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%) 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (18%) 
XXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------------X-X-XXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------XXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------XXXXXXXXXXXXXXXXX--------------------------XXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXX----------------XXXXXXXXXXXXXXX-----------XXXXX
psipred 
--------HHHHHHHHHHHHH----EEEE------HHHHHHHHHHH---EEE------EEE---------HHHHHHHHHH----HHHHHHHHHHH-----HH--------HHHH--HHHHHHHHHHHHHHHH---HHHHHHHH---------HHHHHHHHHHHHH--------------HHHHHH--------------HHHH-----------HHHH---HHHH----HH---HHHHHHHHHH-----EEEEEEEEE-----EEEEEE-----HHHHHHHHHHHHHHHHHHH----------------EEEEE-----HHHHHHHH---HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH------EEE------EEEEE------EE---------------HHHHHHHHHHHHHH---EEE-----EEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH------------HHH-----HHHHHHHHHHHHHHH-----EEE---------HHHHHHHHHHHH-----EEEEE-HHHHHHHHHHHHHH----EEEEEEE----HHHHHHHHHHHHHHHHH---------EEEE-HHHHHHHHHHHH-----EEEEE-HHH-----HHHHHHHHH-----EEE---------HHHHHHHHHH--------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH---HHHHHHHHHHHHH----EEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH------HHHH-----------------HHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH---EEEEEE-HHHHHHHHHHHHHH----EEEE-----HHHHHHHHHHH-------EEEEE---------------EEE------HHHHHH--HHEEE----EEEEEEE-----HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH---HHHHHHHHHHHHHHHH----HHHHHHHH-----------
sam 
---HHHHHHHHHHHHHHHHHHH---EEEE----HHHHHHHHHHHHHH---EEEE---EEEEE------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHH---------------------------H---EE---HHHHH---------------------------------------HHHHHH-------------------------HHHHHHH------------EE------------------H-------------EEEEEEE-----HHHHHHHHHHHHHHHHHHHHHHHH-----------EEEE----------------------HHH-----HHHHHHHHHHHH--HHHHHHHHH--HHHH--------EE-------EEE---------EEEEEEE---HHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH---EEEEH-H----HHHHHHHHHHHHH------EEEEE-HHHHHHHHHHHHHH----EEEEEE-----HHHHHHHHHHHHHHHHHHHHHHHH--EEEE-HHHHHHHHHHHHH---EEEEEE---------HHHHHHHHH-----EEEE-------HHHHHHHHHHHH--H----HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH------EEEEEEE--HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHH--HHHHHHHH--------HHH------HHHHHHHHH-HHHHHHHHHHHHHH-----H----HHHHHHHHHHHHHHHHHH---EEEEE--HHHHHHHHHHHHHH---EEEE-----HHHHHHHHHHHH-----EEEEEEE-------------EEEEE-----HHHHHHHHHHHHHH-----EEEEEEEE--HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-----HHHHHHHHH--------HHHHHHHHHHHHHHHHH---
jufo 
--------HHHHHHHHHHH-----EEEEE------HHHHHHHHHHHH-EEE-------EEEE-------HHHHHHHHHHHHH--HHHHHHHHHHH------------------------HHHHHHHHHHHHHH---HHH-------------HHHHHHHHHHHHHH---------------HHHH------EEEE----------------------------------HHHHHHHHHH---------------EEEEE---EEEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHH-----------------------EEEEEEE-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHEE------EEEE----EEEE--------------HHHHHHHHHHHHHHHH--EEE--------------------------------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHH---EEEE------HHHHHHH-------------EEEE-----------------------------------HHHHHHHHHH---------------------------HH--------------------HHHHHHHH-----HH-----------HHHHHHHHHH----------------------------HHHHHHHHHHHHH--HH--HHH----------------------------------------------------------------------------------HHHHHHHHHHHHH------------HHHH--------------HHHHHHHHHHHHHHHHHH-----------HHH--------------------HHH---HHHHHHH-------------------HHHHHHH--------HHHHHHHHHH------EEEEEEEEE--HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH---HHHHHHHHHHHHHH-------HHHHHHH-----------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    24	    0.218
  max. Y    24	    0.286
  max. S    16	    0.487
  mean S     1-23   0.356
       D     1-23   0.313    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.313 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-232     alignment     2o5cA_201     1-634   0.064000   ISOMERASE/DNA
  233-465     alignment     5cg8A_301     1-266   0.722300   --
  466-1086     alignment     1z3iX_301     1-644   0.703000   Recombination/DNA binding

Ginzu Domain Prediction 2       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-232     msa     2o5cA_201     1-634   0.064000   --
  233-465     alignment     5cg8A_301     1-266   0.722300   --
  466-1086     alignment     1z3iX_301     1-644   0.703000   Recombination/DNA binding


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
5693Trypanosoma cruzi3 (0.07%)0.01-10861-108611841001086ref|XP_812080.1|SNF2 DNA repair protein [Trypanosoma cruzi strain CL Brener]...
0UNIDENTIFIED34 (0.85%)0.01-10861-10861182991086gb|ESS65612.1|SNF2 DNA repair protein [Trypanosoma cruzi Dm28c]
85056Trypanosoma cruzi marinkellei1 (0.03%)0.01-10861-10851125951086gb|EKF28363.1|SNF2 DNA repair protein, putative [Trypanosoma cruzi marinke...
679716Trypanosoma brucei gambiense DAL9722 (0.05%)0.01-10851-1076964561090emb|CBH12615.1|SNF2 DNA repair protein, putative [Trypanosoma brucei gambie...
999953Trypanosoma brucei brucei strain 927/4 GUTat10.13 (0.07%)0.01-10851-1076963561090ref|XP_846088.1|SNF2 DNA repair protein [Trypanosoma brucei brucei strain 92...
1055687Trypanosoma vivax Y4861 (0.03%)1E-1685-5766-56659856572emb|CCC49143.1|putative SNF2 DNA repair protein, fragment [Trypanosoma viva...
5689Leishmania tarentolae1 (0.03%)0.08-108310-1097931481103sp|B6EU02.1|JBP2_LEITARecName: Full=Bifunctional helicase and thymine dioxygenase ...
347515Leishmania major strain Friedlin8 (0.2%)0.075-10831-1021837481036ref|XP_001687603.1|putative j-binding protein [Leishmania major strain Friedlin...
5661Leishmania donovani1 (0.03%)0.075-10831-1021826481036ref|XP_003859376.1|j-binding protein, putative [Leishmania donovani] emb|CBZ326...
435258Leishmania infantum JPCM57 (0.18%)0.075-10831-1021826481036ref|XP_001464187.1|putative j-binding protein [Leishmania infantum JPCM5] emb|C...
929439Leishmania mexicana MHOM/GT/2001/U11031 (0.03%)0.075-10831-1021825481036ref|XP_003873375.1|putative j-binding protein [Leishmania mexicana MHOM/GT/2001...
420245Leishmania braziliensis MHOM/BR/75/M29046 (0.15%)0.08-108310-1097929471103ref|XP_001562198.1|putative j-binding protein [Leishmania braziliensis MHOM/BR/...
134006Phytomonas sp. isolate EM11 (0.03%)0.07-10867-1080912461095emb|CCW64034.1|unnamed protein product [Phytomonas sp. isolate EM1]
28005Strigomonas culicis4 (0.1%)0.05-10821-1075905461099gb|EPY21080.1|DNA repair and recombination protein RAD54B [Strigomonas cul...
59799Angomonas deanei1 (0.03%)1E-147295-10621-75652946772gb|EPY28945.1|DNA repair and recombination protein RAD54B [Angomonas deane...
134013Phytomonas sp. isolate Hart11 (0.03%)0.03-10861-1082901451102emb|CCW69781.1|unnamed protein product [Phytomonas sp. isolate Hart1]
380704Aspergillus niger ATCC 10154 (0.1%)1E-121480-1086152-74944223631gb|EHA18503.1|hypothetical protein ASPNIDRAFT_128714 [Aspergillus niger AT...
443255Streptomyces clavuligerus ATCC 270642 (0.05%)2E-98510-1046249-75136823544ref|WP_003956649.1|helicase [Streptomyces clavuligerus] gb|EDY51061.1| SNF2/RAD...
341663Aspergillus terreus NIH262415 (0.38%)1E-124482-1086187-78445322629ref|XP_001212500.1|DNA repair and recombination protein RAD54 [Aspergillus terr...
425011Aspergillus niger CBS 513.883 (0.07%)1E-123480-1086177-77644922631ref|XP_001393160.2|DNA repair protein rhp54 [Aspergillus niger CBS 513.88]



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