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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780 . 790 . 800 . 810 . 820 . 830 . 840 . 850 . 860 . 870 . 880 . 890 . 900 . 910 . 920 . 930 . 940 . 950 . 960 . 970 . 980 . 990 . 1000 . 1010 . 1020 . 1030 . 1040 . 1050 . 1060 . 1070 . 1080
	MPVPSHVSVTTLQSVLQTVCSTGEPAIIAPSSFLGELDTVVDEVKRHGMKLASIPHGGITILPPVPISGTELFDFCAEYCKAQTHEERLAVRHKINNHNFLMQDPLLRMPCRQLYNPADYVLRIVHLCSELVSASEEEYHGAYGVAPLLHINPVQDVCGKLRSMFQSGSLYVKPWILDEEEERREMDESNRGVLFNSDSFGNGRGGSSISSSSERSVDENDVADEDLTGQEVVDNATDTVVEYLSEKDFDVVTESGIFYDDSGERVHAIYLRGGIKKELCQRAAIAIEEAATTKNLRKAVNGGKTNPETGIVGYYDYLNNPTQRKCRETEFTRKNWSSVVDSCEPFLVALNKLYSECAPTHYKLQRIAIPRHYQLFNTVFSTMTVNRNFRTAVHTDRGDFRSGLAALCVIDGVFEGCHLAIKKLGKAFRLETGDVLFFDTSLEHGNTEVHNFDYCWKRVSVVCYLRNGLMSQICEMERRQWLQKQMLKQRLLDRSRQSVINLNATDPNLPPIYLPGRLLEVLSPVQQAALGFVVDRLSKGNGCVIALTMGLGKTLLSLALCYSHMYDQNPRDVLILAPKIVLTHWTGEKQKWEKYGLVFSHFVVSDGTDSVSFEIALKRYKQQLNGELPRTSHVFVINPEYIRTVLKKLTGFRPSLIIVDEGHRVSSKGSKLKDWLEGLRCTARVILSGTPVQNNAEELYRLIGWINSDVHSVLPPRVFTDLAGTINRYINGDDSALAAAVSAQRYIQEWMCSYVFSVMKTDLPPLNDYIIICGFSSIQRKMLEDHFGMEGIDGLTSIKASEHRPYHLSTHPLCFLGFISGVYKSLNGNHKLTPEAEEELESQEYASQLYSLTEDDIGLIDECLSLVSSGFLTEFVGLSGKMTVLISILHSIREKKEKAIIFSQYVGSQDFISRTLTSFDIVSSTIRGRDCHERRRRTIEKFREDENITCLLLSTQIGAYGLDFTAANHVILWDSWWNPQVESQAIARAYRRNQTRAVIVYRLASEFEDTIVLKTQIRKLALFRCIMNEEASRAVPPEELLDCVDTEEDEGRRFLWRSLKKSYLEGGAPAVSKVFRHGDTVRSESWS
tmhmm (0)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (5%)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXX----------XXXXXXXXXXXXXXXXXX------------------------------------------------------------------XXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (19%)	XXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------X-X-XXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------XXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------XXXXXXXXXXXXXXXXXXXX-------------------------XXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXX-------------XXXXXXXXXXXXXXXXXXXX--------XXXXX
psipred	--------HHHHHHHHHHHHH----EEEE------HHHHHHHHHHH---EEE------EEE--------HHHHHHHHHHH----HHHHHHHHHHH-----HH-------HHHHH--HHHHHHHHHHHHHHHH---HHHHHHHH---------HHHHHHHHHHHHH--------------HHHHHH-----HHHH---------------HHHHHHHHHHH----HH---HHHHHHHHHHHHHHH------------EEE-----EEEEEE-----HHHHHHHHHHHHHHHHHHH-------------------HH-----HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH----HHHEE------EEEE----------------------HHHHHHH-HHHHHHHHHH--EE-----EEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------EE--HHH-----HHHHHHHHHHHHHHH-----EEE-------HHHHHHHHHHHHHH-----EEEEE-HHHHHHHHHHHHHH----EEEEEE-----HHHHHHHHHHHHHHHHH---------EEEE-HHHHHHHHHHHH-----EEEEE-HHH---HHHHHHHHHHHH----EEE---------HHHHHHHHHH--------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------EEEEEE---HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-----HHHHHHHHHHHHH-------------------HHHHHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH---EEEEEE-HHHHHHHHHHHHHH----EEEE-----HHHHHHHHHHH-------EEEEE--------------EEEE------HHHHHHHHHHHH------EEEEEE-----HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHHHH-----------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    24	    0.237
  max. Y    24	    0.292
  max. S    16	    0.454
  mean S     1-23   0.342
       D     1-23   0.311    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.311 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-307	alignment	1eclA_201	1-552	0.021200	TOPOISOMERASE
	308-425	alignment	5cg8A_301	1-266	0.614000	--
	426-506	alignment	3dkqA_302	1-230	0.313800	OXIDOREDUCTASE
	507-1087	alignment	1z3iX_301	1-644	0.739400	Recombination/DNA binding

Ginzu Domain Prediction 2
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-169	cutpref	--	--	0.000000	--
	170-307	cutpref	--	--	0.000000	--
	308-425	alignment	5cg8A_301	1-266	0.614000	--
	426-506	alignment	3dkqA_302	1-230	0.313800	OXIDOREDUCTASE
	507-1087	alignment	1z3iX_301	1-644	0.739400	Recombination/DNA binding

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
0	UNIDENTIFIED	34 (0.85%)	0.0	1-1087	1-1086	1157	98	1087	gb|ESS65612.1|	SNF2 DNA repair protein [Trypanosoma cruzi Dm28c]
5693	Trypanosoma cruzi	3 (0.07%)	0.0	1-1087	1-1086	1156	98	1087	gb|EKF98730.1|	SNF2 DNA repair protein, putative [Trypanosoma cruzi]
85056	Trypanosoma cruzi marinkellei	1 (0.03%)	0.0	1-1087	1-1085	1108	95	1087	gb|EKF28363.1|	SNF2 DNA repair protein, putative [Trypanosoma cruzi marinke...
679716	Trypanosoma brucei gambiense DAL972	1 (0.03%)	0.0	1-1086	1-1076	977	55	1091	emb|CBH12615.1|	SNF2 DNA repair protein, putative [Trypanosoma brucei gambie...
999953	Trypanosoma brucei brucei strain 927/4 GUTat10.1	3 (0.07%)	0.0	1-1086	1-1076	974	55	1091	ref|XP_846088.1|	SNF2 DNA repair protein [Trypanosoma brucei brucei strain 92...
1055687	Trypanosoma vivax Y486	1 (0.03%)	1E-167	5-588	6-592	597	55	598	emb|CCC49143.1|	putative SNF2 DNA repair protein, fragment [Trypanosoma viva...
420245	Leishmania braziliensis MHOM/BR/75/M2904	5 (0.12%)	0.0	8-1084	10-1097	924	48	1103	ref|XP_001562198.1|	putative j-binding protein [Leishmania braziliensis MHOM/BR/...
347515	Leishmania major strain Friedlin	6 (0.15%)	0.0	75-1084	1-1021	827	48	1036	ref|XP_001687603.1|	putative j-binding protein [Leishmania major strain Friedlin...
929439	Leishmania mexicana MHOM/GT/2001/U1103	2 (0.05%)	0.0	75-1084	1-1021	821	48	1036	ref|XP_003873375.1|	putative j-binding protein [Leishmania mexicana MHOM/GT/2001...
435258	Leishmania infantum JPCM5	5 (0.12%)	0.0	75-1084	1-1021	818	48	1036	ref|XP_001464187.1|	putative j-binding protein [Leishmania infantum JPCM5] emb|C...
5661	Leishmania donovani	2 (0.05%)	0.0	75-1084	1-1021	818	48	1036	ref|XP_003859376.1|	j-binding protein, putative [Leishmania donovani] emb|CBZ326...
5689	Leishmania tarentolae	1 (0.03%)	0.0	8-1084	10-1097	924	47	1103	sp|B6EU02.1|JBP2_LEITA	RecName: Full=Bifunctional helicase and thymine dioxygenase ...
28005	Strigomonas culicis	4 (0.1%)	0.0	5-1083	1-1075	915	46	1097	gb|EPY21080.1|	DNA repair and recombination protein RAD54B [Strigomonas cul...
134006	Phytomonas sp. isolate EM1	1 (0.03%)	0.0	7-1087	7-1080	910	46	1097	emb|CCW64034.1|	unnamed protein product [Phytomonas sp. isolate EM1]
59799	Angomonas deanei	1 (0.03%)	1E-150	296-1072	1-765	539	46	781	gb|EPY28945.1|	DNA repair and recombination protein RAD54B [Angomonas deane...
134013	Phytomonas sp. isolate Hart1	1 (0.03%)	0.0	3-1087	1-1082	906	45	1101	emb|CCW69781.1|	unnamed protein product [Phytomonas sp. isolate Hart1]
443255	Streptomyces clavuligerus ATCC 27064	2 (0.05%)	1E-101	511-1047	249-751	377	23	542	ref|WP_003956649.1|	helicase [Streptomyces clavuligerus] gb|EDY51061.1| SNF2/RAD...
341663	Aspergillus terreus NIH2624	15 (0.38%)	1E-125	483-1087	187-784	456	22	629	ref|XP_001212500.1|	DNA repair and recombination protein RAD54 [Aspergillus terr...
502780	Paracoccidioides brasiliensis Pb18	8 (0.2%)	1E-124	486-1087	232-826	454	22	626	gb|EEH48816.1|	DNA repair and recombination protein RAD54 [Paracoccidioides...
482561	Paracoccidioides brasiliensis Pb03	10 (0.25%)	1E-123	486-1087	190-784	452	22	626	gb|EEH22290.1|	DNA repair and recombination protein RAD54 [Paracoccidioides...