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Job 79439 [SSGCID - LebrA.19528.a] [2017-11-20] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] J-binding protein 2 (JBP2) - BATCH:79431

Features and Secondary Structure  
  
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MPSGLMRANTSTELESILDIVQSSGEIAVVFTSPSIGDLETITSETQRRQLRIAGIPRGGYTILPAIPLYDDELLQMCERYTAASEHEKVEIRNSLYMREYPLFAYSMRNQRALFHPADYVSRILQFCFHYVQVPDEDVLSLQDRSPFLHISPVKEICVHLRLIVRGTPAAPDESESPVPEQLHFHAESDAEKLAAERARALSIAASSGGASETEPLSLFTGVAPSALFQKGAVEEVDLDTEETIEDLTGEETVDAVHSFHSEYLTLSGFELVTKASIFYDHEGEGQRVVAVYIPGGVPKETCRAAAAVLELAVTKKNLRAATNGGLPPDTGIVGYYDYLTNPTQHKCRETEFSRRNWGLFSQSESLLKHLDKLYSQLAPTHHHLQRVAIPSQYQLCGTVFSTITVNRNFRTAVHTDKGDFRSGLGVLSVINGEFEGCHLAIKSLKKAFQLKVGDVLLFDTSLEHGNTEVVHPENHWQRTSIVCYLRTGLMSSVCEMERRKHLNRLILQQLLNTEIRHTTVNINEADSSLPPLFVPTRLASQLAPVQLAALGFIVERTNKQSGCVVAMTMGLGKTLVALTLCFSHLHLAPQADILILTPKPIISHWVDEKNKWGMYGLHFPHFVASDGLNSLEFEQQLLEYERQKNNEKPKAGHVFVINSEYLAGFLRRFRRFTPFLIIVDEGHRVAAKGNKLTESLDRLRCNLRVVLSGTPLQNDASELYRLVGWVNKGVSKVLPPKRFQELANSINQFVEGDDGAFYNAVMAQEYIQDWMRGFVFREMENDLPPLHDYLLVCGSSNVQREYEEKLGLTETAMTALRATEHRPHHLSTHPACYLAFISNCYQSMVSGWTVRAQSNTSRLRTTQLEEIDAMRLEQYAQMIENEQLDAFINVSGKMRVLVDIVLRVQARKEKLIIFSLYVGSQDLIHRTLTALRVCTFTVRGRDSQDRRRRAMHEFSENKDLTVLVLSTKIAAYGLEFTAANHVVLFDSWWNPQADAQAIARAYRRNQRKPVTVYRLISATENKFVLRSQTRKIALFKCIFHKRTTRQALPSELEDCSANETDNERRDFWAKLKATHLVGDTRALLNVYRYQESVRESQ
tmhmm (0) 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (4%) 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%) 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (18%) 
XXXXXXXX-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------------------------X-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXX------------------------------------------------XXXXXXXXXXXXXXXXXXXX--------------------------------------------------X-----X----------------------------------------------------------------X----------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXXXXX
psipred 
-----EE--HHHHHHHHHHHHHH----EEEE------HHHHHHHHHHH---EEEE-----EEE--------HHHHHHHHHHH---HHHHHHHHHHHHHH----------HHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHH-HH----HHHHHHHHHHHHH---------------HHHHHHHHH----------------------------HH------HHHHHHHHHHHHHHHHHH------HHHHHH------HHH--------------EE--------EEEEE------HHHHHHHH--------HHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH------HHHHHH-----------------------EEEEE------HHHHHHHHHHHHHHHHHH------EEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH-----HHHHHHHHHHHHHHH-----EEE------HHHHHHHHHHHHHHH-----EEEEE-HHHHHHHHHHHHHH----EEEEEE-------HHHHHHHHHHHHHHHHH-------EEE--HHHHHHHHHHHH-----EEEEE-HHH---HHHHHHHHHHH----EEEE---------HHHHHHHHHHHH-------HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH--------EEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH------HHHHHH-------------------------HHHHHHHHHHHHHHH---EEEEEE-HHHHHHHHHHHHHH----EEEE-----HHHHHHHHHH-------EEEEEEHHH-------HH--EEEE------HHHHHHHHHHHHHH----EEEEEE-----HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH---HHHHHHHHHHH---HH----HHHHHHHH---------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    45	    0.121
  max. Y     2	    0.128
  max. S    22	    0.181
  mean S     1-1    0.167
       D     1-1    0.143    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.143 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1     Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-209     alignment     2l82A_101     1-162   0.154200   DE NOVO PROTEIN
  210-490     alignment     5cg9A_302     1-267   0.656700   --
  491-1098     alignment     5x0xO_301     1-583   0.502100   --

Ginzu Domain Prediction 2     Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-209     msa     2l82A_101     1-162   0.154200   --
  210-490     alignment     5cg9A_302     1-267   0.656700   --
  491-1098     alignment     5x0xO_301     1-583   0.502100   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
420245Leishmania braziliensis MHOM/BR/75/M29045 (0.12%)0.01-10981-109810881001098ref|XP_001562198.1|putative j-binding protein [Leishmania braziliensis MHOM/BR/...
0UNIDENTIFIED30 (0.75%)0.01-10981-10981056901098sp|Q4QFY1.2|JBP2_LEIMARecName: Full=Bifunctional helicase and thymine dioxygenase ...
347515Leishmania major strain Friedlin7 (0.18%)0.077-10981-1022944901022ref|XP_001687603.1|putative j-binding protein [Leishmania major strain Friedlin...
929439Leishmania mexicana MHOM/GT/2001/U11032 (0.05%)0.077-10981-1022944901022ref|XP_003873375.1|putative j-binding protein [Leishmania mexicana MHOM/GT/2001...
435258Leishmania infantum JPCM56 (0.15%)0.077-10981-1022929901022ref|XP_001464187.1|putative j-binding protein [Leishmania infantum JPCM5] emb|C...
5661Leishmania donovani2 (0.05%)0.077-10981-1022929901022ref|XP_003859376.1|j-binding protein, putative [Leishmania donovani] emb|CBZ326...
5689Leishmania tarentolae1 (0.03%)0.01-10981-10981041891098sp|B6EU02.1|JBP2_LEITARecName: Full=Bifunctional helicase and thymine dioxygenase ...
134006Phytomonas sp. isolate EM11 (0.03%)0.01-10981-1078885521101emb|CCW64034.1|unnamed protein product [Phytomonas sp. isolate EM1]
28005Strigomonas culicis4 (0.1%)0.014-10988-1077894511095gb|EPY21080.1|DNA repair and recombination protein RAD54B [Strigomonas cul...
134013Phytomonas sp. isolate Hart11 (0.03%)0.09-10987-1080860491093emb|CCW69781.1|unnamed protein product [Phytomonas sp. isolate Hart1]
85056Trypanosoma cruzi marinkellei1 (0.03%)0.08-10976-1082884481105gb|EKF28363.1|SNF2 DNA repair protein, putative [Trypanosoma cruzi marinke...
59799Angomonas deanei1 (0.03%)1E-136319-10841-76449148771gb|EPY28945.1|DNA repair and recombination protein RAD54B [Angomonas deane...
5693Trypanosoma cruzi3 (0.07%)0.06-10975-1083900471107gb|EKF98730.1|SNF2 DNA repair protein, putative [Trypanosoma cruzi]
999953Trypanosoma brucei brucei strain 927/4 GUTat10.14 (0.1%)0.011-10989-1075848431093ref|XP_846088.1|SNF2 DNA repair protein [Trypanosoma brucei brucei strain 92...
679716Trypanosoma brucei gambiense DAL9721 (0.03%)0.011-10989-1075848431093emb|CBH12615.1|SNF2 DNA repair protein, putative [Trypanosoma brucei gambie...
1055687Trypanosoma vivax Y4861 (0.03%)1E-1431-6051-58851842629emb|CCC49143.1|putative SNF2 DNA repair protein, fragment [Trypanosoma viva...
5141Neurospora crassa2 (0.05%)1E-121525-1096203-76144223594ref|XP_959470.1|DNA repair and recombination protein RAD54 [Neurospora crass...
559297Ajellomyces dermatitidis ER-33 (0.07%)1E-120493-1096150-74244023628gb|EEQ85094.1|DNA repair and recombination protein RAD54 [Ajellomyces derm...
443255Streptomyces clavuligerus ATCC 270642 (0.05%)2E-98532-1059249-75036723537ref|WP_003956649.1|helicase [Streptomyces clavuligerus] gb|EDY51061.1| SNF2/RAD...
350704Pseudomonas aeruginosa C37191 (0.03%)3E-97532-1052181-64936422523ref|WP_004348251.1|helicase [Pseudomonas aeruginosa] gb|EAZ56599.1| hypothetica...



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