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Job 81173 [SSGCID - MygeA.00029.a] [2018-02-01] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Thioredoxin - BATCH:81172

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

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Features and Secondary Structure  
 
1   .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100 
 
MVTEIRSLKQLEEIFSAKKNVIVDFWAAWCGPCKLTSPEFQKAADEFSDAQFVKVNVDDHTDIAAAYNITSLPTIVVFENGVEKKRAIGFMPKTKIIDLFNN
tmhmm (0)
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low complexity (0%)
------------------------------------------------------------------------------------------------------
coiled-coils (0%)
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disordered (2%)
X----------------------------------------------------------------------------------------------------X
psipred
-EEEE--HHHHHHHH----EEEEEEE----HHHHHHHHHHHHHHHH----EEEEEE----HHHHHH-------EEEEEE--EEEEEE-----HHHHHHHH--

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    44	    0.236
  max. Y    44	    0.190
  max. S    43	    0.278
  mean S     1-43   0.161
       D     1-43   0.178    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.178 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
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Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-102     alignment     4cw9B_201     1-104   0.9649   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
368408Thermofilum pendens Hrk 52 (0.05%)2E-2511-9239-1211204583ref|YP_920530.1|thioredoxin [Thermofilum pendens Hrk 5] ref|WP_011752792.1| ...
1094508Thermoanaerobacterium saccharolyticum JW/SL-YS4852 (0.05%)1E-323-974-991444496ref|YP_006392239.1|thioredoxin [Thermoanaerobacterium saccharolyticum JW/SL-YS4...
858215Thermoanaerobacterium xylanolyticum LX-112 (0.05%)5E-333-974-991454396ref|YP_004470832.1|thioredoxin [Thermoanaerobacterium xylanolyticum LX-11] ref|...
1229781Brevibacterium casei S181 (0.03%)2E-321-1001-10114343101ref|WP_009376880.1|thioredoxin [Brevibacterium casei] gb|EKU48451.1| thioredoxi...
748727Clostridium ljungdahlii DSM 135281 (0.03%)4E-301-1011-10213643102ref|YP_003782176.1|thioredoxin [Clostridium ljungdahlii DSM 13528] ref|YP_00869...
498761Heliobacterium modesticaldum Ice11 (0.03%)8E-332-1016-10614542101ref|YP_001680420.1|thioredoxin [Heliobacterium modesticaldum Ice1] ref|WP_01228...
883109Eubacterium infirmum F01421 (0.03%)3E-322-1013-10214342100ref|WP_006000117.1|thiol-disulfide isomerase [[Eubacterium] infirmum] gb|EHO859...
698948Thermoanaerobacterium thermosaccharolyticum M07952 (0.05%)3E-323-974-991434296ref|YP_003852208.1|thioredoxin [Thermoanaerobacterium thermosaccharolyticum DSM...
469378Cryptobacterium curtum DSM 156411 (0.03%)4E-311-1011-10213942102ref|YP_003151275.1|thioredoxin [Cryptobacterium curtum DSM 15641] ref|WP_012803...
401526Thermosinus carboxydivorans Nor12 (0.05%)1E-302-1023-10513842103ref|WP_007288865.1|thioredoxin [Thermosinus carboxydivorans] gb|EAX48211.1| thi...
1129368Spiroplasma melliferum IPMB4A1 (0.03%)8E-271-981-991254299ref|WP_004027799.1|thioredoxin [Spiroplasma melliferum] emb|CAK99640.1| putativ...
656519Halanaerobium hydrogeniformans1 (0.03%)3E-322-1004-10314341100ref|YP_003994206.1|thioredoxin [Halanaerobium hydrogeniformans] ref|WP_01340495...
411903Collinsella aerofaciens ATCC 259861 (0.03%)1E-317-10112-1071414196ref|WP_006235224.1|thioredoxin [Collinsella aerofaciens] gb|EBA39701.1| thiored...
1321778Clostridiales bacterium oral taxon 876 str. F05401 (0.03%)7E-311-1011-10113841102ref|WP_021657809.1|thioredoxin [Clostridiales bacterium oral taxon 876] gb|ERI8...
1050716candidate division YNPFFA1 (0.03%)2E-293-1017-10613441100ref|WP_018194386.1|hypothetical protein [candidate division YNPFFA]
1125702Treponema vincentii F04031 (0.03%)3E-291-1001-10113341101ref|WP_006190066.1|thioredoxin [Treponema vincentii] gb|EEV19315.1| thioredoxin...
1097677Clavibacter michiganensis subsp. nebraskensis NCPPB 25812 (0.05%)2E-284-986-1001304195ref|YP_001223713.1|putative thioredoxin [Clavibacter michiganensis subsp. michi...
436907Vanderwaltozyma polyspora DSM 702943 (0.07%)2E-271-1021-10212741103ref|XP_001645789.1|hypothetical protein Kpol_1010p47 [Vanderwaltozyma polyspora...
861360Arthrobacter arilaitensis Re1171 (0.03%)5E-262-984-1011234198ref|YP_003918586.1|thioredoxin [Arthrobacter arilaitensis Re117] ref|WP_0133507...
583355Coraliomargarita akajimensis DSM 452211 (0.03%)6E-2620-10023-1041224182ref|YP_003548129.1|thioredoxin [Coraliomargarita akajimensis DSM 45221] ref|WP_...






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