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Job 81174 [SSGCID - MygeA.00163.a] [2018-02-01] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Phenylalanine--tRNA ligase alpha subunit - BATCH:81172

Features and Secondary Structure  
 
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MIDQNKLITKWKKAFAKAKNLTTLVNLKNTLHNSDLKPLLQKIKTATKLSEKSSLGKLYQSLDIQLTDLLTSYKKTFEINNQVSQKPSLDVMLPATEFTNGSNNALYQVIDNLVEYFKSFLFTINFDSELTSISDCFDLLNIPKDHSSRNESDSFYIDKTSLLRTHCTATTLKAVRTSKKTNNPDIRVVSLGAVFRNDSDDATHSHQFTQLDFMWIKKGLSLANLKWFINNMITHFFGENTFTRFRLSHFPFTEPSFEIDIRCWLCQNGCSICKQTKWIEILGAGIIHPQVMNNMGIGDTENITGIAAGIGIERLAMLKYGIDDIRDFYDNNFKFLTQFTD
tmhmm (0)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (4%)
----------------XXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (14%)
XXXX---XXX--XXXXXX-X------------------XXXXXXXXXXXXXXXX---------------------XXXXXXXXXXXX-------------------------------------------------------------------------------------------XXX--------------------------------------------------------------------------------------------------------------------------------------------------------------XX
psipred
---HHHHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHH---EEE-------HHHHHHHH----------HHHHH-------------HHHHHHHHHHHH------EEEEE--------------------EEEEE-----HHHHHHHHHHHHHHH-----EEEE-------------EEEEEEE-------------EEEE------HHHHH----------EEEEE---HHHHHHHH----HHHHHHH--HHHHHHH--

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    17	    0.120
  max. Y    17	    0.238
  max. S     9	    0.628
  mean S     1-16   0.433
       D     1-16   0.314    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.314 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
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Ginzu Domain Prediction 1     Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-75     alignment     3onjA_302     1-97   0.334400   Protein transport
  76-341     alignment     2rhqA_201     1-270   0.979300   LIGASE


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
708616Mycoplasma gallisepticum str. F1 (0.03%)1E-991-3411-33836949341ref|YP_005880745.1|phenylalanyl-tRNA synthetase subunit alpha [Mycoplasma galli...
164393Lactobacillus fuchuensis1 (0.03%)6E-48153-2861-13419849135emb|CAJ33118.1|phenylalanyl-tRNA synthase alpha subunit [Lactobacillus fuch...
710128Mycoplasma gallisepticum str. R(high)1 (0.03%)6E-991-3411-33836748341ref|NP_853143.2|phenylalanyl-tRNA synthetase subunit alpha [Mycoplasma galli...
214326Lactobacillus sakei subsp. sakei1 (0.03%)2E-53153-3031-15021647152emb|CAJ33071.1|phenylalanyl-tRNA synthase alpha subunit [Lactobacillus sake...
214325Lactobacillus sakei subsp. carnosus2 (0.06%)2E-53153-3031-15021647152emb|CAK95417.1|phenylalanyl-tRNA synthase alpha subunit [Lactobacillus sake...
28038Lactobacillus curvatus3 (0.09%)2E-47153-2841-13219647133emb|CAK95430.1|phenylalanyl-tRNA synthase alpha subunit [Lactobacillus curv...
1599Lactobacillus sakei1 (0.03%)5E-46153-2821-13019147131emb|CAO00673.1|phenylalanyl-tRNA synthase [Lactobacillus sakei] emb|CAO0067...
60519Lactobacillus graminis1 (0.03%)2E-50166-3081-14220646144emb|CAJ33094.1|phenylalanyl-tRNA synthase alpha subunit [Lactobacillus gram...
254785Streptococcus halichoeri1 (0.03%)6E-54153-2911-13921845140emb|CAK30103.1|phenylalanyl-tRNA synthase alpha subunit [Streptococcus hali...
340047Mycoplasma capricolum subsp. capricolum ATCC 273431 (0.03%)9E-48132-2791-15119745151emb|CAA83779.1|Phe-tRNA synthetase [Mycoplasma capricolum subsp. capricolum...
1590Lactobacillus plantarum23 (0.66%)5E-60152-3121-16023844162gb|ACS14147.1|PheS [Lactobacillus plantarum]
105612Lactobacillus algidus1 (0.03%)6E-57153-3031-15022744152emb|CAK22323.1|phenylalanyl-tRNA synthase alpha subunit [Lactobacillus algi...
60520Lactobacillus paraplantarum2 (0.06%)2E-54153-3031-15021944152emb|CAJ33079.1|phenylalanyl-tRNA synthase alpha subunit [Lactobacillus para...
337330Lactobacillus plantarum subsp. plantarum2 (0.06%)2E-54153-3031-15021944152emb|CAJ33066.1|phenylalanyl-tRNA synthase alpha subunit [Lactobacillus plan...
119602Streptococcus dysgalactiae subsp. equisimilis1 (0.03%)2E-51153-2861-13420944135emb|CAK30123.1|phenylalanyl-tRNA synthase alpha subunit [Streptococcus dysg...
483011Lactobacillus fabifermentans1 (0.03%)6E-49152-2831-13220144133emb|CAP58276.1|phenylalanyl-tRNA synthetase alpha chain [Lactobacillus fabi...
102886Streptococcus didelphis1 (0.03%)5E-58153-3041-15123143153emb|CAK30080.1|phenylalanyl-tRNA synthase alpha subunit [Streptococcus dide...
259059Lactobacillus satsumensis1 (0.03%)2E-57153-2981-14622943147emb|CAJ33121.1|phenylalanyl-tRNA synthase alpha subunit [Lactobacillus sats...
33961Lactobacillus homohiochii1 (0.03%)5E-56153-3031-15022543152emb|CAJ33122.1|phenylalanyl-tRNA synthase alpha subunit [Lactobacillus fruc...
1302Streptococcus gordonii3 (0.09%)7E-56153-2981-14622443147emb|CAL18460.1|phenylalanyl-tRNA synthase alpha subunit [Streptococcus gord...






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