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Job 81181 [SSGCID - MygeA.00966.a] [2018-02-01] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Probable ribose-5-phosphate isomerase B - BATCH:81172

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

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Features and Secondary Structure  
 
1   .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150 
 
MSFNIFIASDHTGLTLKKIISEHLKTKQFNVVDLGPNYFDANDDYPDFAFLVADKVKKNSDKDLGILICGTGVGVCMAANKVKGVLAALVVSEKTAALARQHDNANVLCLSSRFVTDSENIKIVDDFLKANFEGGRHQRRIDKIIRYEKETE
tmhmm (0)
--------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)
--------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)
--------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (5%)
X-----------------------------------------------------------------------------------------------------------------------------------------------X--XXXXX
psipred
---EEEEE---HHHHHHHHHHHHHHH---EEEEE------------HHHHHHHHHHHH-----EEEEE----HHHHHHHHH----EEE----HHHHHHHHHH----EEEE------HHHHHHHHHHHH--------HHHHHHHHHHHHH---

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    42	    0.109
  max. Y    20	    0.133
  max. S     7	    0.263
  mean S     1-19   0.171
       D     1-19   0.148    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.148 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-152     alignment     3k7pA_306     1-153   0.9600   ISOMERASE


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
662947Mycoplasma genitalium M22881 (0.04%)4E-531-1521-152213100152ref|NP_073069.1|ribose-5-phosphate isomerase B [Mycoplasma genitalium G37] r...
1238993Mycoplasma pneumoniae M129-B71 (0.04%)8E-501-1511-15020266151ref|YP_005881584.1|ribose-5-phosphate isomerase B [Mycoplasma pneumoniae FH] re...
926562Owenweeksia hongkongensis DSM 173681 (0.04%)1E-553-1451-14122152143ref|YP_004989924.1|ribose 5-phosphate isomerase B [Owenweeksia hongkongensis DS...
511051Caldisericum exile AZM16c011 (0.04%)2E-603-1491-14523751147ref|YP_005472666.1|ribose-5-phosphate isomerase B [Caldisericum exile AZM16c01]...
298701Desulfovibrio sp. A21 (0.04%)1E-531-1431-14021450143ref|WP_007521981.1|ribose 5-phosphate isomerase [Desulfovibrio sp. A2] gb|EGY27...
596152Desulfovibrio sp. U5L1 (0.04%)5E-521-1451-14320950145ref|WP_009108018.1|ribose 5-phosphate isomerase [Desulfovibrio sp. U5L] gb|EIG5...
644968Desulfovibrio sp. FW1012B1 (0.04%)1E-511-1451-14320750145ref|WP_009180646.1|ribose 5-phosphate isomerase [Desulfovibrio sp. FW1012B] gb|...
152509uncultured Bacteroidetes bacterium1 (0.04%)2E-394-1473-14416750144dbj|BAL55638.1|ribose 5-phosphate isomerase B [uncultured Bacteroidetes bac...
313606Microscilla marina ATCC 231341 (0.04%)3E-533-1451-14121349143ref|WP_002699163.1|ribose 5-phosphate isomerase [Microscilla marina] gb|EAY2754...
336989Pontibacter roseus1 (0.04%)5E-521-1441-14220949144ref|WP_018476314.1|ribose 5-phosphate isomerase [Pontibacter roseus]
1006581Mycoplasma gallisepticum S61 (0.04%)9E-434-1525-15617849152ref|NP_852922.2|ribose 5-phosphate isomerase [Mycoplasma gallisepticum str. ...
0UNIDENTIFIED233 (8.93%)3E-613-1511-14723948149ref|WP_010293809.1|ribose 5-phosphate isomerase [Clostridium senegalense]
1075091Clostridium sporogenes PA 36791 (0.04%)3E-603-1491-14523648147ref|WP_003491883.1|ribose 5-phosphate isomerase [Clostridium sporogenes] gb|EHN...
441771Clostridium botulinum A str. Hall1 (0.04%)1E-593-1491-14523448147ref|YP_001252691.1|ribose-5-phosphate isomerase B [Clostridium botulinum A str....
515621Clostridium botulinum Ba4 str. 6571 (0.04%)1E-593-1491-14523448147ref|YP_002861014.1|ribose-5-phosphate isomerase B [Clostridium botulinum Ba4 st...
1248417Clostridium botulinum Af841 (0.04%)1E-593-1491-14523448147ref|YP_002802458.1|ribose-5-phosphate isomerase B [Clostridium botulinum A2 str...
1232188Clostridium botulinum CFSAN0016281 (0.04%)2E-593-1491-14523348147ref|YP_001389507.1|ribose-5-phosphate isomerase B [Clostridium botulinum F str....
867902Ornithobacterium rhinotracheale DSM 159971 (0.04%)2E-573-1458-14822748143ref|YP_006426934.1|ribose 5-phosphate isomerase B [Ornithobacterium rhinotrache...
391009Thermosipho melanesiensis BI4291 (0.04%)3E-573-1491-14522648147ref|YP_001306421.1|RpiB/LacA/LacB family sugar-phosphate isomerase [Thermosipho...
1279009Cesiribacter andamanensis AMV161 (0.04%)4E-561-1451-14322248145ref|WP_009193901.1|putative ribose-5-phosphate isomerase B [Cesiribacter andama...






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