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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410
	MLDPNKLRNNYDFFKKKLLERNVNEQLLNQFIQTDKLMRKNLQQLELANQKQSLLAKQVAKQKDNKKLLAESKELKQKIENLNNAYKDSQNISQDLLLNFPNIAHESVPVGKNESANLELLKEGRKPVFDFKPLPHRELCEKLNLVAFDKATKISGTRFVAYTDKAAKLLRAITNLMIDLNKSKYQEWNLPVVINELSLRSTGQLPKFKDDVFKLENTRYYLSPTLEVQLINLHANEIFNEEDLPKYYTATGINFRQEAGSAGKQTKGTIRLHQFQKTELVKFCKPENAINELEAMVRDAEQILKALKLPFRRLLLCTGDMGFSAEKTYDLEVWMAASNEYREVSSCSSCGDFQARRAMIRYKDINNGKNSYVATLNGTALSIDRIFAAILENFQTKDGKILIPQALKKYLDFDTIK
tmhmm (0)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (7%)	----------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (6%)	-------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
psipred	---HHHHHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------EEEEEE-----------HHHHHHHH-------HHHHH-----HHHH-HHHHHHHHHHHHHHHHHH---EEEEEHH--HHHHHHHH------HHH-EE-----EEEE----HHHHHHHH-EEE-HHH--EEE--------------------EEEEEEEE----EEEE-HHHHHHHHHHHHHHHHHHHHH----EEEEE---------HHH---HHHHHHHH--HHHHH-------------EEEEEE------EEEEEE----HHHHHHHHHHHHH-------EE--HHHHHH----EE-

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    63	    0.118
  max. Y    13	    0.161
  max. S     8	    0.428
  mean S     1-12   0.272
       D     1-12   0.204    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.204 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-417	alignment	1wleA_201	1-465	0.9055	LIGASE

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
432331	Sulfurihydrogenibium yellowstonense SS-5	1 (0.03%)	3E-98	162-411	1-251	365	57	252	ref|WP_007546706.1|	seryl-tRNA synthetase [Sulfurihydrogenibium yellowstonense] ...
29397	Lactobacillus delbrueckii subsp. lactis	1 (0.03%)	2E-32	326-413	2-88	146	55	88	gb|AAQ07213.1|AF496521_1	seryl-tRNA synthetase [Lactobacillus delbrueckii subsp. lact...
708616	Mycoplasma gallisepticum str. F	1 (0.03%)	1E-129	1-417	1-420	468	50	420	ref|YP_005881042.1|	seryl-tRNA synthetase [Mycoplasma gallisepticum str. F] ref|...
430558	Francisella novicida GA99-3549	4 (0.1%)	2E-97	160-417	1-262	362	50	262	ref|WP_003033445.1|	seryl-tRNA synthetase [Francisella novicida] gb|EDN35997.1| ...
90370	Salmonella enterica subsp. enterica serovar Typhi	1 (0.03%)	5E-49	199-336	1-145	201	50	145	gb|ABL01708.1|	unknown, partial [Salmonella enterica subsp. enterica serova...
401526	Thermosinus carboxydivorans Nor1	3 (0.08%)	1E-123	126-417	3-296	448	49	294	ref|WP_007290691.1|	seryl-tRNA synthetase, partial [Thermosinus carboxydivorans]...
478547	Campylobacter jejuni subsp. jejuni CG8421	1 (0.03%)	5E-97	150-411	2-263	361	49	263	ref|WP_002860278.1|	seryl-tRNA synthetase [Campylobacter jejuni] gb|EDZ32720.1| ...
526347	Ureaplasma urealyticum serovar 11 str. ATCC 33695	1 (0.03%)	1E-138	1-411	1-417	498	48	417	ref|WP_004027035.1|	seryl-tRNA synthase [Ureaplasma urealyticum] gb|EDU66786.1| ...
515611	Ureaplasma urealyticum serovar 13 str. ATCC 33698	1 (0.03%)	1E-138	1-411	1-417	498	48	417	ref|WP_004027157.1|	seryl-tRNA synthase [Ureaplasma urealyticum] gb|EDT49746.1| ...
626095	Ureaplasma urealyticum serovar 8 str. ATCC 27618	1 (0.03%)	1E-138	1-411	1-417	497	48	417	ref|YP_002284526.1|	seryl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str...
550748	Ureaplasma urealyticum serovar 4 str. ATCC 27816	1 (0.03%)	1E-138	1-411	1-417	497	48	417	ref|WP_004026386.1|	seryl-tRNA synthase [Ureaplasma urealyticum] gb|EDX53383.1| ...
515608	Ureaplasma parvum serovar 1 str. ATCC 27813	1 (0.03%)	1E-137	1-411	1-417	496	48	417	ref|WP_006689324.1|	seryl-tRNA synthase [Ureaplasma parvum] gb|EDT49225.1| seryl...
626096	Ureaplasma urealyticum serovar 2 str. ATCC 27814	1 (0.03%)	1E-137	1-411	1-417	495	48	417	ref|WP_004027441.1|	seryl-tRNA synthase [Ureaplasma urealyticum] gb|EEH02246.1| ...
400667	Acinetobacter baumannii ATCC 17978	1 (0.03%)	1E-109	143-413	1-273	402	48	274	ref|YP_001085741.1|	seryl-tRNA synthetase [Acinetobacter baumannii ATCC 17978] r...
375063	Haemophilus influenzae 22.4-21	2 (0.05%)	5E-71	235-416	2-184	275	48	183	ref|WP_005672020.1|	seryl-tRNA synthetase [Haemophilus influenzae] gb|EDK13176.1...
1121864	Enterococcus cecorum DSM 20682 = ATCC 43198	1 (0.03%)	1E-163	1-416	1-420	580	47	421	ref|WP_016250545.1|	seryl-tRNA synthetase 2 [Enterococcus cecorum] gb|EOX18618.1...
1121865	Enterococcus columbae DSM 7374 = ATCC 51263	1 (0.03%)	1E-163	1-416	1-420	581	46	421	ref|WP_016184173.1|	seryl-tRNA synthetase 2 [Enterococcus columbae] gb|EOT39190....
1158608	Enterococcus haemoperoxidus ATCC BAA-382	1 (0.03%)	1E-161	1-412	1-417	575	46	418	ref|WP_010762181.1|	seryl-tRNA synthetase 2 [Enterococcus haemoperoxidus] gb|EOH...
333990	Carnobacterium sp. AT7	2 (0.05%)	1E-160	1-413	1-419	572	46	419	ref|WP_007724653.1|	seryl-tRNA synthase [Carnobacterium sp. AT7] gb|EDP67618.1| ...
1300150	Enterococcus mundtii QU 25	1 (0.03%)	1E-160	1-417	1-423	571	46	424	ref|YP_008825756.1|	seryl-tRNA synthetase [Enterococcus mundtii QU 25] ref|WP_02...