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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 .
	MAQKEIINKKNTQKNSSFIESNNLTSFDFFDAKKNSEIETISTGSLNLDEALGSGGLPLGRIVELYGNESSGKTTIALNAVASFQKAGKTACYIDAEGALDLAYAKSIGIDLNKLLIAHPRHGENAFALIESLIKTNKISLIVIDSVAALIPKQELEGTIEEQTIGLHARMMSKGLRRIQSILPDSKTCVLFINQLREKPGVMFGNNEVTTGGKALRFYSSLRMEAKRVELLKDKFNNYVGIKTKVMVSKNKIAKPFGVAILEIMFNRGFVHEHEVIDLALKFNVVVRAGNSYSFNNESIAVGKEKLLNVLSEKPALFEQIKELTVQQLANKNSFQQTAS
tmhmm (0)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (8%)	XXX----X---------------------XXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXX
psipred	--HHHHHHHHHHHHHHHHHHH---EEEE-----------EE----HHHHHHH---------EEEEE------HHHHHHHHHHHH-----EEEEEE-HHHHHHHHHHHH--------------HHHHHHHHHHHHHHH-----EEEE------HHHH---------HHHHHHHHHHHHHHHHHHHH---EEEEEEEEEE----------------HHHHHHHEEEEEE---HH-------EEEEEEEEEEE--------EEEEEEE---EE----HHHHHHHH--EEE----EEEE--EEE---HHHHHHHHHH-HHHHHHHHHHHHHHH-----------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    33	    0.115
  max. Y     3	    0.150
  max. S     9	    0.286
  mean S     1-2    0.218
       D     1-2    0.177    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.177 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-340	alignment	3cmvA_107	1-1190	0.8154	RECOMBINATION

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
662947	Mycoplasma genitalium M2288	1 (0.03%)	1E-93	1-340	1-340	349	100	340	ref|NP_073009.1|	recombinase A [Mycoplasma genitalium G37] ref|YP_006599885.1...
284028	Streptomyces fulvorobeus	1 (0.03%)	6E-58	49-216	1-168	231	57	168	gb|ABK55901.1|	recombinase A [Streptomyces fulvorobeus]
66881	Streptomyces cremeus	1 (0.03%)	6E-58	49-216	1-168	231	57	168	gb|ABK55869.1|	recombinase A [Streptomyces cremeus] gb|ABK55879.1| recombin...
67296	Streptomyces finlayi	1 (0.03%)	5E-58	49-216	1-168	231	57	168	gb|ABK55862.1|	recombinase A [Streptomyces finlayi]
193461	Streptomyces aureus	1 (0.03%)	7E-58	49-216	1-168	230	57	168	gb|ABK55884.1|	recombinase A [Streptomyces aureus]
193460	Streptomyces sanglieri	1 (0.03%)	2E-57	49-216	1-168	229	57	168	gb|ABK55886.1|	recombinase A [Streptomyces griseobrunneus] gb|ABV00475.1| r...
1944	Streptomyces halstedii	1 (0.03%)	2E-57	49-216	1-168	229	57	168	gb|ABK55854.1|	recombinase A [Streptomyces graminofaciens] gb|ABK55882.1| r...
2014	Nocardiopsis dassonvillei subsp. dassonvillei	1 (0.03%)	8E-57	49-216	1-168	227	57	168	gb|ABK55867.1|	recombinase A [Nocardiopsis dassonvillei subsp. dassonvillei...
67280	Streptomyces bobili	1 (0.03%)	2E-58	49-216	1-168	232	56	168	gb|ABK55868.1|	recombinase A [Streptomyces bobili]
1961	Streptomyces virginiae	1 (0.03%)	5E-58	49-216	1-168	231	56	168	gb|ABK55865.1|	recombinase A [Streptomyces virginiae]
54571	Streptomyces venezuelae	1 (0.03%)	5E-58	49-216	1-168	231	56	168	gb|ABK55864.1|	recombinase A [Streptomyces venezuelae]
68276	Streptomyces torulosus	1 (0.03%)	5E-58	49-216	1-168	231	56	168	gb|ABK55896.1|	recombinase A [Streptomyces tanashiensis] gb|ABV00489.1| rec...
67310	Streptomyces kishiwadensis	1 (0.03%)	8E-58	49-216	1-168	230	56	168	gb|ABK55874.1|	recombinase A [Streptomyces cyaneus] gb|ABV00478.1| recombin...
58345	Streptomyces mauvecolor	1 (0.03%)	9E-58	49-216	1-168	230	56	168	gb|ABK55900.1|	recombinase A [Streptomyces mauvecolor] gb|AGZ94623.1| recom...
988894	Streptomyces sp. FXJ6.363	1 (0.03%)	7E-58	49-216	1-168	230	56	168	gb|ABK55851.1|	recombinase A [Streptomyces vinaceus] gb|ABK55852.1| recombi...
67338	Streptomyces olivoviridis	1 (0.03%)	7E-58	49-216	1-168	230	56	168	gb|ABK55856.1|	recombinase A [Streptomyces atroolivaceus] gb|ABK55860.1| re...
67269	Streptomyces alboviridis	1 (0.03%)	2E-57	49-216	1-168	229	56	168	gb|ABK55847.1|	recombinase A [Streptomyces luridiscabiei] gb|ABK55853.1| re...
67351	Streptomyces puniceus	1 (0.03%)	7E-58	49-216	1-168	230	55	168	gb|ABK55848.1|	recombinase A [Streptomyces californicus] gb|ABK55899.1| rec...
1886	Streptomyces albidoflavus	1 (0.03%)	7E-58	49-216	1-168	230	55	168	gb|ABK55876.1|	recombinase A [Streptomyces cirratus] gb|ABK55881.1| recombi...
1169025	Streptomyces sp. Char 24	1 (0.03%)	3E-57	49-216	1-168	229	55	168	gb|ABK55850.1|	recombinase A [Streptomyces yanii] gb|ABK55873.1| recombinas...