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Job 81191 [SSGCID - MygeA.19107.a] [2018-02-01] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Glycine--tRNA ligase - BATCH:81172

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

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Features and Secondary Structure  
 
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MAKVYNQEVYVQFLKQHGFVFQSSEIYNGLNNSWDFGPLGAVLKQQIKQALYNFFIKNKADVLLVETPIILSELVWKASGHLANFVDTLVDCKSCKYRFRVDQINAEIKAKKDWNSFKVNCPNCHNQNWSEVRDFNLLFQTEIGVVNNDKRLVFLRPETAQGSFINFKNILQAKKRNLPFAIAQFGKSFRNEITPGNFLFRTREFEQFEIEWFCKPDDANSLFEKQLIMVEQFLQTVLKINPELLKKHEYDQSELAHYAKKTTDFLFNFPHGLKELWGLANRGDFDLKQHQEFSKKSMSFFDSELNQHFLPFIIEPAVGIERLFYALIVSSYRREIINEEEREVLSLPFDLCPEQIIVLPLVNKLKKEAFSVFETLAKTRWRVCFETTGSIGKRYRKADAIGIKYAVTFDFESLEDNAVTIRDRDTLVQQRIAIKELPQWFMKNGQ
tmhmm (0)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (2%)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXX-------------------------------------------------------------------------------------------------------
coiled-coils (0%)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (1%)
XXXX---X-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------X
psipred
----HHHHHHHHHHHH--------------EE-EEE---HHHHHHHHHHHHHHHHH-----EEEEE------HHH----------------------EEE-HHHHHHHHHHH---EEEE-----------------------------------------HHHHHHHHHHHHH------HHHHHHHHHH-------------EEEEE----EEE-HHHHHHHHHHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHHH-----EEE--------HHHHHHHH------HHHHHHH-------EEEEE----HHHHHHHHHHHHHHHH----EEE-----------EEEEE-----HHHHHHHHHHHHHH---EEEE-----HHHHHHHHHHH--EEEEEE----HH--EEEEEE-----EEEEEHHHHHHHHHHH--

# SignalP-4.0 gram- predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C     3	    0.104
  max. Y     3	    0.133
  max. S     2	    0.192
  mean S     1-2    0.181
       D     1-2    0.156    0.570  NO
Name=tmp_signalp_seq	SP='NO' D=0.156 D-cutoff=0.570 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-446     alignment     5e6mA_204     1-519   0.8591   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
662947Mycoplasma genitalium M22881 (0.03%)1E-1471-4461-446527100446ref|NP_072916.1|glycyl-tRNA synthetase [Mycoplasma genitalium G37] ref|YP_00...
272633Mycoplasma penetrans HF-21 (0.03%)1E-1471-4461-45952950460ref|NP_757728.1|glycyl-tRNA synthetase [Mycoplasma penetrans HF-2] ref|WP_01...
1159204Mycoplasma gallisepticum NC08_2008.031-4-3P1 (0.03%)1E-1404-4452-46150450460ref|YP_006581272.1|glycyl-tRNA synthetase [Mycoplasma gallisepticum VA94_7994-1...
1006581Mycoplasma gallisepticum S61 (0.03%)1E-1394-4452-46150350460ref|YP_005880714.1|glycyl-tRNA synthetase [Mycoplasma gallisepticum str. F] ref...
710128Mycoplasma gallisepticum str. R(high)1 (0.03%)1E-1384-4452-46150050460ref|NP_853173.2|glycyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)...
1054943Candidatus Arthromitus sp. SFB-21 (0.03%)1E-112121-4462-32641348327ref|WP_007440647.1|Putative tRNA synthetase class II, partial [Candidatus Arthr...
1048830Mycoplasma iowae 6951 (0.03%)1E-791-2521-26330448264ref|WP_004024997.1|glycyl-tRNA synthetase [Mycoplasma iowae] gb|EGZ31294.1| gly...
1276227Spiroplasma chrysopicola DF-11 (0.03%)1E-1534-4462-45554946456ref|YP_008017676.1|glycyl-tRNA synthetase [Spiroplasma chrysopicola DF-1] ref|W...
626096Ureaplasma urealyticum serovar 2 str. ATCC 278142 (0.05%)1E-1463-4444-46252646459ref|WP_004027418.1|glycyl-tRNA synthetase [Ureaplasma urealyticum] gb|EEH02209....
626095Ureaplasma urealyticum serovar 8 str. ATCC 276182 (0.05%)1E-1463-4444-46252546459ref|YP_002284940.1|glycyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 st...
2130Ureaplasma urealyticum1 (0.03%)1E-1463-4444-46252546459ref|WP_016829267.1|glycyl-tRNA synthetase [Ureaplasma urealyticum]
519851Ureaplasma parvum serovar 6 str. ATCC 278181 (0.03%)1E-1463-4444-46252446459ref|WP_006688822.1|glycyl-tRNA synthetase [Ureaplasma parvum] gb|EDU19490.1| gl...
515609Ureaplasma parvum serovar 14 str. ATCC 336971 (0.03%)1E-1453-4444-46252246459ref|WP_006689044.1|glycyl-tRNA synthetase [Ureaplasma parvum] gb|EDT49174.1| gl...
505682Ureaplasma parvum serovar 3 str. ATCC 278151 (0.03%)1E-1453-4444-46252046459ref|NP_078330.1|glycyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATC...
77133uncultured bacterium41 (1.03%)1E-1581-4411-45056645453gb|EKD47637.1|hypothetical protein ACD_65C00350G0003 [uncultured bacterium...
1276229Spiroplasma syrphidicola EA-11 (0.03%)1E-1554-4462-45555345456ref|YP_008026452.1|glycyl-tRNA synthetase [Spiroplasma syrphidicola EA-1] ref|W...
1179777Mycoplasma sp. G58471 (0.03%)1E-1491-4451-45553445458ref|WP_008363937.1|glycine--tRNA ligase [Mycoplasma sp. G5847] gb|ELK19949.1| g...
340047Mycoplasma capricolum subsp. capricolum ATCC 273431 (0.03%)1E-1491-4451-45553445458ref|YP_424478.1|glycyl-tRNA synthetase [Mycoplasma capricolum subsp. caprico...
866629Mycoplasma leachii 99/014/61 (0.03%)1E-1491-4451-45553445458ref|YP_004047263.1|glycine--tRNA ligase [Mycoplasma leachii PG50] ref|YP_005907...
743965Mycoplasma putrefaciens KS11 (0.03%)1E-1461-4421-45252545455ref|YP_004790208.1|glycyl-tRNA synthetase [Mycoplasma putrefaciens KS1] ref|WP_...






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