old.robetta.org

Click the icons below each image to download the prediction in PDB format ( )

Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780 . 790 . 800 . 810 . 820 . 830 . 840 . 850 . 860 . 870 . 880 . 890
	MDLKKTLLMPKTSFAMQANLSTSEKNFHDFWKDKKVFQKLKKQNKGKQIKILHDGPPYANGSIHVGHALNKILKDFILRSWLYEGYDVVFIPGWDCHGLPIEHAVSKKNPSSYSNLSTVEKRKLCHQFALSQIAVQKEQFQRLGLLNDFQNCYYTIDESFQFKELELFLQAIKKGLIFQDLKPTYWSPISRTSLAEAEIEYKEVNSIALYLTFKVSKSDFLDENANLLVWTTTPWTLPTNQAIAIHPDFDYLLFEYNQQKFVILEKLFEVFTNKLNWTNAIKLKKFKGSNLKNSSYSHCFYNKVLPVLMGIHVVDNEGTGIVHSSPAFGIDDFYLCQKNKIKEVLISIDEKGVFNNLLNDKELENCFYLKANDLIINRLKQNNSFIFSEVISHREPHDWRSKTPVIYRASKQLFIKTKSIKKQLKKQINQVNFLNSKNQLRLKEMLLQRDEWCISRQRVWGLPIPIVYANNKPLLDFSTIQYTIKQLKKHGIDSWFEKDVTCFLKPDKTKKWVKYHKEIDTLDVWFDSGSSYNVLEINKYGSIADLYIEGSDQYRGWFNSSSNCGIIQNDLIPFKSLVSHGFTLDENGNKMSKSLGNIVDPLKICDQYGADILRLWVANTDWQIDNKIGVNILKQVAEQYRRIRNSLLRFILGNINGFNFTSMDDYKFSLEDKIVIHKTNSLVEQIEKFLEKYNFLGCLKVINKFVLWLSSWYFEIIKDTLYCDAKNNPNRLAKQAVLNYIFTQLISFLNIFIPHTAEDAWKNYSFNKKPISVNLFTKPTVFKVANSKNLGNIYKTFTSIKNAAFKEIEKLRKEGLISKNNQIELTVGINKKIPKKLKDNLALWLNVNSVNLTNNENEIKVKKTKKTMCERCWNFQTIIKQKLDHNLCSRCFKVC
tmhmm (0)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (7%)	-------------------------------XXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXX-------------------------------------
coiled-coils (0%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (0%)	X------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
psipred	-------------------HHHHHHHHHHHHHH---HHHHHHH------EEEE-----------HHHHHHHHHHHHHHHHHH----------------HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH-EEE----------HHHHHHHHHHHHHHHH---EEE--EEE---------HHHHHHH-------EEEEEEEE----------EEEEE-----HHHH--EEEE----EEEEEE----EEEEHHHHHHHHHHH------EEEEEE-HHHH---EEE-------EEEE-------------EE------HHHHHHHHH------EEEE----EE------HH----EEE--HHHHHHHHHH---EE----EEEE---------EEEEEE---EEEEHHHHHHHHHHHH--EEEE-HHHHHHHHHHHH---------------EEEEEEE----EE----HHHHHHHHHH----------HHHH-----------EEE-----------------HHH--------EEEEE--HHHHHHHHHHHHHHHH-----HHHHH--EEEE----------------HHHHHHHH--HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHEEE--HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------EEEEE-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH--------EEEEEE--HHHHHHHHHHHHHHHEEEEEEEE----EEEEEE---------------------------HHH--

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    26	    0.138
  max. Y    16	    0.279
  max. S     4	    0.717
  mean S     1-15   0.605
       D     1-15   0.406    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.406 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-895	alignment	1ffyA_201	1-917	0.9653	LIGASE/RNA

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
710128	Mycoplasma gallisepticum str. R(high)	1 (0.03%)	0.0	2-893	4-895	868	45	898	ref|NP_853101.2|	Isoleucyl-tRNA synthetase [Mycoplasma gallisepticum str. R(l...
708616	Mycoplasma gallisepticum str. F	1 (0.03%)	0.0	2-893	4-895	865	45	898	ref|YP_005880789.1|	isoleucyl-tRNA synthetase [Mycoplasma gallisepticum str. F] ...
626096	Ureaplasma urealyticum serovar 2 str. ATCC 27814	1 (0.03%)	0.0	2-894	3-895	878	43	901	ref|YP_002284847.1|	isoleucyl-tRNA synthetase [Ureaplasma urealyticum serovar 10...
243272	Mycoplasma arthritidis 158L3-1	1 (0.03%)	0.0	2-894	6-883	924	41	894	ref|YP_002000088.1|	isoleucyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1] r...
347256	Mycoplasma hominis ATCC 23114	1 (0.03%)	0.0	2-894	6-884	911	41	895	ref|YP_003302843.1|	Isoleucyl-tRNA synthetase [Mycoplasma hominis ATCC 23114] re...
527026	Bacillus thuringiensis serovar sotto str. T04001	1 (0.03%)	0.0	1-800	1-804	1006	40	810	ref|WP_003279609.1|	isoleucyl-tRNA synthetase [Bacillus thuringiensis] gb|EEM405...
1599	Lactobacillus sakei	1 (0.03%)	1E-179	99-662	1-566	636	40	571	gb|AAL00939.1|AF401660_1	isoleucyl-tRNA synthetase [Lactobacillus sakei]
471223	Geobacillus sp. WCH70	2 (0.05%)	0.0	1-894	1-916	1151	39	921	ref|YP_002949165.1|	isoleucyl-tRNA synthetase [Geobacillus sp. WCH70] ref|WP_015...
997296	Bacillus methanolicus PB1	1 (0.03%)	0.0	1-894	1-914	1140	39	920	ref|WP_003350282.1|	isoleucyl-tRNA synthetase [Bacillus methanolicus] gb|EIJ8157...
796606	Bacillus methanolicus MGA3	1 (0.03%)	0.0	1-894	1-914	1137	39	920	ref|WP_003348918.1|	isoleucyl-tRNA synthetase [Bacillus methanolicus] gb|EIJ7950...
1191699	Bacillus sp. ZYK	1 (0.03%)	0.0	1-894	1-914	1119	39	919	ref|WP_017753650.1|	isoleucyl-tRNA synthetase [Bacillus sp. ZYK]
649639	Bacillus cellulosilyticus DSM 2522	2 (0.05%)	0.0	1-894	2-914	1070	39	918	ref|YP_004095563.1|	isoleucyl-tRNA synthetase [Bacillus cellulosilyticus DSM 252...
441768	Acholeplasma laidlawii PG-8A	2 (0.05%)	0.0	1-894	1-891	968	39	904	ref|YP_001620694.1|	isoleucine amino-acyl tRNA synthetase [Acholeplasma laidlawi...
496833	Mycoplasma fermentans PG18	1 (0.03%)	0.0	1-894	8-889	912	39	899	ref|YP_007762283.1|	hypothetical protein [Mycoplasma fermentans PG18] ref|WP_015...
637387	Mycoplasma fermentans JER	1 (0.03%)	0.0	1-894	3-884	911	39	899	ref|YP_003923136.1|	isoleucine--tRNA ligase [Mycoplasma fermentans JER] ref|WP_0...
943945	Mycoplasma fermentans M64	1 (0.03%)	0.0	1-894	3-884	911	39	899	ref|YP_004137189.1|	isoleucyl-tRNA synthetase [Mycoplasma fermentans M64] ref|WP...
333990	Carnobacterium sp. AT7	2 (0.05%)	0.0	1-741	1-746	911	39	751	ref|WP_007723020.1|	isoleucyl-tRNA synthetase, partial [Carnobacterium sp. AT7] ...
37692	Candidatus Phytoplasma mali	1 (0.03%)	0.0	1-893	1-905	906	39	913	ref|YP_002004286.1|	isoleucyl-tRNA synthetase [Candidatus Phytoplasma mali] ref|...
420246	Geobacillus thermodenitrificans NG80-2	2 (0.05%)	0.0	1-894	1-917	1157	38	922	ref|YP_001125124.1|	isoleucyl-tRNA synthetase [Geobacillus thermodenitrificans N...
654421	Anoxybacillus sp. SK3-4	1 (0.03%)	0.0	1-894	1-914	1155	38	919	ref|WP_021094889.1|	isoleucyl-tRNA synthetase [Anoxybacillus sp. SK3-4] gb|EPZ38...