old.robetta.org

Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370
	MEKNRSAFQQNQQASNQPFNQDQNQYYQDPNQQQFNQSGFDPNQQQFNQPGFDPNQQYYQDPNQQQFNQAGFDQNQQYYQDPNQQQFNQPGFDPNQQYYQDPNQQQFNQAGFDQNQYYQDPNQQQFNQSGFDQNQYYQDPNQQQFNQPSFDLNNQQFNQPGFNQSPAFEITPQEQKAEQEMFGEEPPQVVREIHELPFEKIRSFLQSDFDSYNFRLNSLKSKLDNALYSLDKTIQNTNENTANLEAIRHNLEQKIQNQSKQLRTNFDTQKLDDKINELEIRMQKLTRNFESLSELSKHNSYPNYYEKLLPNGGDSMTNVFEKALMMNLLRTTLPPQPQVQYYPQPYPYIRPYYDEPIYAGFRRRGYRDDFYE
tmhmm (0)	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (40%)	-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------XXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXX----XXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXX-------------------
coiled-coils (15%)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------
disordered (59%)	XXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------XXXX-------------------------------XXXXXXXXXXXXXX----------------------------XXXXXXXXXX---------------------------------------------------------------XXXXXX
psipred	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHH--------------------------HHHHHH---------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    17	    0.119
  max. Y    27	    0.142
  max. S    21	    0.322
  mean S     1-26   0.182
       D     1-26   0.158    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.158 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-66	alignment	2mxwA_201	1-92	0.350500	--
	67-174	alignment	2mxwA_302	1-92	0.253600	--
	175-214	alignment	5suoA_201	1-451	0.521400	--
	215-372	alignment	2gd5D_307	1-162	0.158700	PROTEIN TRANSPORT

Ginzu Domain Prediction 2
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-66	alignment	2mxwA_201	1-92	0.350500	--
	67-174	alignment	2mxwA_302	1-92	0.253600	--
	175-214	alignment	5suoA_201	1-451	0.521400	--
	215-372	msa	2gd5D_307	1-162	0.158700	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
488339	synthetic Mycoplasma genitalium JCVI-1.0	1 (0.61%)	5E-81	1-372	1-372	308	100	372	ref|NP_072882.1|	proline-rich P65 protein [Mycoplasma genitalium G37] ref|WP_...
662945	Mycoplasma genitalium M6320	1 (0.61%)	1E-79	1-372	1-373	303	100	373	ref|YP_006599757.1|	proline-rich P65 protein [Mycoplasma genitalium M2321] ref|Y...
662947	Mycoplasma genitalium M2288	1 (0.61%)	8E-81	1-372	1-372	307	99	372	ref|YP_006601247.1|	proline-rich P65 protein [Mycoplasma genitalium M2288] ref|W...
662946	Mycoplasma genitalium M6282	1 (0.61%)	2E-79	1-372	1-373	302	99	373	ref|YP_006600245.1|	proline-rich P65 protein [Mycoplasma genitalium M6282] ref|W...
2097	Mycoplasma genitalium	1 (0.61%)	4E-66	36-372	4-332	258	94	337	ref|WP_009885756.1|	hypothetical protein [Mycoplasma genitalium]
2104	Mycoplasma pneumoniae	3 (1.83%)	5E-52	102-372	1-263	211	44	283	ref|WP_019830458.1|	hypothetical protein, partial [Mycoplasma pneumoniae]
722438	Mycoplasma pneumoniae FH	2 (1.22%)	5E-48	2-372	48-423	198	39	384	emb|CAA84430.1|	P65 protein [Mycoplasma pneumoniae FH]
1112856	Mycoplasma pneumoniae 309	1 (0.61%)	6E-47	2-372	48-423	195	39	384	ref|YP_005175548.1|	cytadherence-related protein P65 [Mycoplasma pneumoniae 309]...
1238993	Mycoplasma pneumoniae M129-B7	1 (0.61%)	2E-46	1-372	1-405	193	39	408	ref|NP_109997.1|	hypothetical protein MPN309 [Mycoplasma pneumoniae M129] ref...
1133968	Babesia microti strain RI	1 (0.61%)	8E-35	4-174	644-816	154	34	173	emb|CCF75815.1|	unnamed protein product [Babesia microti strain RI]
246197	Myxococcus xanthus DK 1622	1 (0.61%)	4E-21	36-180	59-212	109	29	156	ref|YP_634013.1|	hypothetical protein MXAN_5876 [Myxococcus xanthus DK 1622] ...
455488	Anaeromyxobacter dehalogenans 2CP-1	1 (0.61%)	4E-21	2-192	155-370	109	29	218	ref|YP_002490508.1|	chemotaxis protein CheA [Anaeromyxobacter dehalogenans 2CP-1...
447217	Anaeromyxobacter sp. K	1 (0.61%)	5E-19	2-188	170-390	102	28	227	ref|YP_002132443.1|	CheA signal transduction histidine kinase [Anaeromyxobacter ...
7739	Branchiostoma floridae	2 (1.22%)	3E-13	3-174	22-190	83	28	174	ref|XP_002608730.1|	hypothetical protein BRAFLDRAFT_73951 [Branchiostoma florida...
411474	Coprococcus eutactus ATCC 27759	1 (0.61%)	7E-10	10-156	118-265	72	28	149	ref|WP_004852485.1|	hypothetical protein [Coprococcus eutactus] gb|EDP26803.1| h...
144245	Dinocampus coccinellae	1 (0.61%)	7E-13	16-162	128-258	82	27	147	gb|AAR87861.1|	teratocyte-specific carboxylesterase [Dinocampus coccinellae...
1089454	Gordonia terrae NBRC 100016	1 (0.61%)	2E-4	8-145	214-353	53	27	141	ref|WP_004023304.1|	peptide-binding protein [Gordonia terrae] dbj|GAB46410.1| hy...
104421	Camponotus floridanus	1 (0.61%)	2E-22	6-243	840-1065	113	26	238	gb|EFN74957.1|	hypothetical protein EAG_01272 [Camponotus floridanus]
5480	Candida parapsilosis	3 (1.83%)	4E-46	20-237	3-246	192	25	252	gb|ABX80511.1|	beta-1,3-glucan synthase catalytic subunit 1 [Candida paraps...
45351	Nematostella vectensis	1 (0.61%)	6E-28	4-306	838-1154	131	25	326	ref|XP_001622163.1|	hypothetical protein NEMVEDRAFT_v1g221080 [Nematostella vect...