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Job 81209 [SSGCID - MygeA.20074.a] [2018-02-01] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Threonine--tRNA ligase - BATCH:81172

Full Structure Predictions  
Model 1

chemical/x-pdb MIME type  PDB file 		Model 2

chemical/x-pdb MIME type  PDB file 		Model 3

chemical/x-pdb MIME type  PDB file 		Model 4

chemical/x-pdb MIME type  PDB file 		Model 5

chemical/x-pdb MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

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Features and Secondary Structure  
  
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mlagvlllqiwlkckyaNVQFGEHGFNGDEFYLDFYINENFSTKQFAKIESDLNSLSSKLEGISQKFVSLDEALSFFENDQFTKNLLKKSNLNKFKITFFENKHFWIEDLTLTFIKKSFIKLLNVSVNYFLGDPSQLQLQRINGIFAQSKKELEQLIKENEERLKKDHRSLGKQLELFSFDPLIGAGLPIWLAKGTTLRNIIGNFVHHQQLLFGFNTVCSPVLANIELFKISGHYQHYKEDMFPAIKLDSQAMMLRPMTCPHHCLIFKQKRYSYKKMPQRFSEDSILHRFEASGGLIGLERVRCMTLLDNHIFCRADQIKSEIKNAFNLIQKVNKKFGFIFDRIDLSLHDPKNQSKFIDNPGLWRESESQMENVLKDLNIQYQKEIGAAAFYGPKIDFQFKTIFKKMITIATIQLDFLLPEKFDLTYIDKKNTLKKPVIIHVGIIGTYERFIAALLEKTSGNFPLWLAPVQAVIIPVNIQKHLKAAKKLYNKLLKENIRVNLDDNQDRLAKKVRQAIIEKIPLQLIVGDKEIENLEKLTCRGFKGEKITRISFNNFVKRVRRDG
tmhmm (0) 
                 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (5%) 
                 ------------------------------------------------------------------XXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXX---------------------------------------------------------------------
coiled-coils (10%) 
                 -------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (3%) 
                 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXX--------XX
psipred 
                 --EEE-------EEEEEE-------HHHHHHHHHHHHHHHH----EEEEEE-HHHHHHHHH---HHHHHHHH------EEEEEE---EEE----------HHEEEEEHHHHH--------HHHHHHHHH---HHHHH-------HHHHHHHHHHHHHHHHEEE-------EEEE---HHHHHHHHHHHHHHHHHH--EEEEE------HHHHHHHHHHHH--------EE---HHEE------HHHHHHHH-----HHHHHHHHHHHH-EE-----------------EE---HHHH---HHHHHHHHHHHHHHHHHHHHHHHH--------------EE---HHHHHHHHHHHHHHHHH------------EE--------------HH----EEE---------------------EEEEEEE----HHHHHHHHHHHH------------EEEEEE---HHHHHHHHHHHHHH---EEEEEEE-----HHHHHHHHHH----EEEEE--HHHHH--EEEEEE----EEEEEEHHHHHHHHHHH-

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    18	    0.295
  max. Y    18	    0.432
  max. S    13	    0.713
  mean S     1-17   0.621
       D     1-17   0.534    0.450  YES
Name=tmp_signalp_seq	SP='YES' Cleavage site between pos. 17 and 18: KYA-NV D=0.534 D-cutoff=0.450 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-547     alignment     1qf6A_201     1-641   0.8801   LIGASE/RNA


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
1282Staphylococcus epidermidis3 (0.07%)0.01-54691-63868842550ref|WP_020364255.1|threonyl-tRNA synthase [Staphylococcus epidermidis] gb|EPP69...
979214Staphylococcus epidermidis NIHLM0311 (0.03%)0.01-54691-63868742550ref|WP_002457807.1|threonyl-tRNA synthase [Staphylococcus epidermidis] gb|EFV89...
979211Staphylococcus epidermidis NIHLM0231 (0.03%)0.01-54691-63868742550ref|WP_002446647.1|threonyl-tRNA synthase [Staphylococcus epidermidis] gb|EES35...
904325Staphylococcus epidermidis VCU0711 (0.03%)0.01-54691-63868642550ref|WP_002474762.1|threonyl-tRNA synthase [Staphylococcus epidermidis] gb|EHM64...
979216Staphylococcus epidermidis NIHLM0151 (0.03%)0.01-54691-63868542550ref|WP_002491783.1|threonyl-tRNA synthase [Staphylococcus epidermidis] gb|EHR99...
883130Staphylococcus epidermidis BVS058A41 (0.03%)0.01-54691-63868542550ref|WP_002476902.1|threonyl-tRNA synthetase [Staphylococcus epidermidis] gb|EKS...
979201Staphylococcus epidermidis NIHLM0871 (0.03%)0.01-54691-63868542550ref|WP_002493936.1|threonyl-tRNA synthase [Staphylococcus epidermidis] gb|EJD78...
1115805Staphylococcus epidermidis E13A1 (0.03%)0.01-54691-63868442550ref|YP_188820.1|threonyl-tRNA synthetase [Staphylococcus epidermidis RP62A] ...
406560Streptococcus pneumoniae SP14-BS692 (0.05%)1E-149121-5461-42653442427ref|WP_001810761.1|threonyl-tRNA synthetase [Streptococcus pneumoniae] gb|EDK66...
1169277Staphylococcus aureus M15101 (0.03%)0.01-54691-63869541550ref|NP_372207.1|threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureu...
904726Staphylococcus aureus subsp. aureus 211931 (0.03%)0.01-54691-63869541550ref|WP_000435133.1|threonyl-tRNA synthase [Staphylococcus aureus] gb|EGG69449.1...
29380Staphylococcus caprae1 (0.03%)0.01-546100-64769541550ref|WP_002443325.1|threonyl-tRNA synthase [Staphylococcus caprae] gb|EES39930.1...
931455Staphylococcus aureus subsp. aureus CIGC340D1 (0.03%)0.01-54691-63869441550ref|WP_000435138.1|threonyl-tRNA synthase [Staphylococcus aureus] gb|EHT79331.1...
904729Staphylococcus aureus subsp. aureus 211961 (0.03%)0.01-54691-63869441550ref|WP_000435134.1|threonyl-tRNA synthase [Staphylococcus aureus] gb|EHS20014.1...
1116219Staphylococcus aureus subsp. aureus VRS61 (0.03%)0.01-54691-63869441550ref|WP_000435130.1|threonyl-tRNA synthase [Staphylococcus aureus] gb|EIK06784.1...
904750Staphylococcus aureus subsp. aureus 212721 (0.03%)0.01-54691-63869441550ref|WP_000435124.1|threonyl-tRNA synthase [Staphylococcus aureus] gb|EHO99793.1...
1155084Staphylococcus aureus subsp. aureus 711931 (0.03%)0.01-54691-63869441550ref|YP_006195756.1|Threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureu...
904334Staphylococcus capitis VCU1161 (0.03%)0.01-54691-63869441550ref|WP_002435998.1|threonyl-tRNA synthase [Staphylococcus capitis] gb|EEE48590....
1280Staphylococcus aureus3 (0.07%)0.01-54691-63869441550ref|NP_646443.1|threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureu...
1158485Staphylococcus aureus M13111 (0.03%)0.01-54691-63869441550ref|WP_001622231.1|threonyl-tRNA synthetase [Staphylococcus aureus] gb|ENM75321...



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