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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780 . 790
	MPVTKKSQILVVRGQVIFPFVPFSLDVGRPRSRKIIKALKTLKTKRLVLVTQKFTGEQNPEFNDIYHVGTLCEIDEIVDVPGVDSKTVDYRIKGRGLQRVLIEKFSDADINEVSYQLLNSTVKDEANVDRFLQRIFPEKEEIEQLMEGAEKFLELENISKTVNVPKGLKQLDIITFKLANLVPNTESIKQAILEENEIANRLEKIIQAGIEDLQKIQDYGRSKNKETEFDKLDSKITRKINEQLSRQQRDFYLREKLRIIREEIGISSKKEDEVASIRKKLDENPYPEAIKKRILSELEHYENSSSSSQESTLTKTYIDTLLNLPWWQKSKDNSDVKNLIKTLDKNHTGLDKVKERIVEYLAVQLRTQKNKGPIMCLVGPPGVGKSSLAKSIAEALDKKFVKISLGGVHDESEIRGHRKTYLGSMPGRILKGMTRAKVINPLFLLDEIDKMTSSNQGYPSGALLEVLDPELNNKFSDNYVEEDYDLSKVMFIATANYIEDIPEALLDRMEIIELTSYTEQEKIEIAKNHLIKRCLEDADLNSEELKFTDEAISYIIKFYTREAGVRQLERLIQQVVRKYIVAMQKDGIKQETIDVNAVKKYLKKEIFDHTMRDEVSLPGIVNGMAYTPTGGDLLPIEVTHVAGKGELILTGNLKQTMRESANVALGYVKANAERFNINPSLFKKIDINIHVPGGGIPKDGPSAGAALVTAIISSLTGKKVDPTVAMTGEITLRGKVLVIGGVKEKTISAYRGGVTTIFMPEKNERYLDEVPKEIVDKLNIIFVKEYSDIYNKLFS
tmhmm (0)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (4%)	--------------------------------XXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (10%)	XXX----------------------------------------------------XXX--------------------------------------------------------------XXXXX--------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXX-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
psipred	-----EEEEEEE---EE-----EEEEE--HHHHHHHHHHHH----EEEEEEE---------HHHHH----EEEEEEEEE------EEEEEEEEEEEEEEEEEE-------EEEEEEEE-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH----HHH---------HHHHHHHHHHHH----HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH------------HHHHHH-------HHHHHHHHHHHHHHHHHHHH------EEEE--------HHHHHHHHHH---EEEEE------HHHH------------------HHH------EEEE--HHH------------------HH------------------EEEEE---------HHHH---EEEE-----HHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH---------EEEE-------------EEEEE----EEEEEEEEEE----EEEEEE---HHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHH--------EEEEEEE-----EEEHHHHHHHHHHHHH----EEEE-HHHHHHHHHHHHHHH---EEEEE--HHHHHHHHH-
sam	--------EEEE--EEEE--EEEEEE------HHHHHHHHH----EEEEEEE---------HHHHHHH-EEEEEEEEH-----------EEEEEEEEEEEEEEEEE-----EEEEEEEEEE-HHHH------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH--HHHHHHHHHHH----HHHHHHHHHH--HHHHHHHHHH--H-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH----H----HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-----EEEEE-------HHHHHHHHHHHH---HEEEE------HHH------------HHHHHHHHHH------EEEE-HHHHHHH-----HHHHHHH---HHHHHH------HHHH-HHHHEEEEH---H-----HH----EEEE-----HHHHHHHHHHHHHHHHHHHH------EEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----EEEEHHHHHHHH---E------H-----EEEE--EEE-----EEEEEEEEE----EEEE-----HHHHHHHHHHHHHHHHHHHH-----HH-----EEEEE---------HHHHHHHHHHHHHHHH-------EEEEEEEEE--EEE-----HHHHHHHHHH---EEEE-------HHH--HHHHHH--EEEE--HHHHHHHHH-
jufo	-----EEEEEEE---------EEEEEE-HHHHHHHHHHHHHH---EEEEEEE----------------EEEEEE------------EEEEEEEEEEEEEEEEEEEE-----EEEEE-------------HHHHHHHHHHHHHHHHHHHH-----HHHHH-----------HHHHHHHHHHH----HHHHHHHHHHH--HHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHH----HHHHHHHHHHHHHHH----------HHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHH--------EEE---HHHHHHHHHHHHHHH---EEEEEE----------------------HHHHHHHHHH---EEEEE------------------------------------------EEEEEEEE-------------HHHH----------HHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHH------------------------EEE---------EEEEE----EEEEE---HHHHHHHHHHHHHHHHH----------------EEEEE---------HHHHHHHHHHHHHHHH-------EEEEEEE----EEEE---HHHHHHHHHHH-EEEEEEEE--HHHHHHHHHHH---EEEEEEEEHHHHHHHHHH

# SignalP-4.0 gram- predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    25	    0.122
  max. Y    15	    0.186
  max. S     8	    0.479
  mean S     1-14   0.338
       D     1-14   0.258    0.570  NO
Name=tmp_signalp_seq	SP='NO' D=0.258 D-cutoff=0.570 Networks=SignalP-noTM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-266	alignment	5fqdB_304	1-381	0.707400	--
	267-795	alignment	3m6aA_302	1-496	0.973900	HYDROLASE

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
1112856	Mycoplasma pneumoniae 309	1 (0.03%)	1E-180	1-795	1-795	638	78	795	ref|YP_005175571.1|	ATP-dependent protease Lon [Mycoplasma pneumoniae 309] ref|Y...
708616	Mycoplasma gallisepticum str. F	1 (0.03%)	1E-163	8-794	11-810	581	54	813	ref|YP_005880731.1|	ATP-dependent Lon protease [Mycoplasma gallisepticum str. F]...
710128	Mycoplasma gallisepticum str. R(high)	1 (0.03%)	1E-162	8-794	11-810	579	53	812	ref|NP_853156.2|	ATP-dependent Lon protease [Mycoplasma gallisepticum str. R(...
314289	Vibrio sp. AND4	5 (0.12%)	1E-98	402-775	2-375	367	51	375	ref|WP_009844658.1|	ATP-dependent protease LA, partial [Vibrio sp. AND4] gb|EDP5...
568206	Bacillus anthracis str. CDC 684	2 (0.05%)	1E-156	257-794	1-538	559	50	538	ref|YP_002817259.1|	ATP-dependent protease La 1, partial [Bacillus anthracis str...
6182	Schistosoma japonicum	1 (0.03%)	4E-37	680-795	12-127	163	50	116	gb|AAW25519.1|	SJCHGC03265 protein [Schistosoma japonicum]
247633	marine gamma proteobacterium HTCC2143	4 (0.1%)	1E-127	328-794	3-469	463	49	468	ref|WP_007225009.1|	ATPase AAA [marine gamma proteobacterium HTCC2143] gb|EAW320...
417399	Vibrio cholerae NCTC 8457	2 (0.05%)	1E-155	257-794	1-538	557	48	539	ref|WP_001900843.1|	peptidase [Vibrio cholerae] gb|EAZ71945.1| ATP-dependent pro...
422289	Beggiatoa sp. PS	3 (0.07%)	1E-147	257-793	1-538	530	48	539	gb|EDN69196.1|	Peptidase S16, ATP-dependent protease La [Beggiatoa sp. PS]
519851	Ureaplasma parvum serovar 6 str. ATCC 27818	1 (0.03%)	1E-147	8-794	6-790	528	48	797	ref|WP_006688804.1|	Lon protease [Ureaplasma parvum] gb|EDU19472.1| ATP-dependen...
515609	Ureaplasma parvum serovar 14 str. ATCC 33697	1 (0.03%)	1E-147	8-794	4-788	528	48	797	ref|WP_006689153.1|	Lon protease [Ureaplasma parvum] gb|EDT49068.1| ATP-dependen...
566550	Clostridium hathewayi DSM 13479	1 (0.03%)	1E-138	260-794	1-534	500	48	535	ref|WP_006776207.1|	ATP-dependent protease La, partial [Clostridium hathewayi] g...
404974	Vibrio cholerae AM-19226	2 (0.05%)	8E-53	641-794	1-154	215	48	154	ref|WP_001891914.1|	ATP-dependent protease [Vibrio cholerae] gb|EDN15093.1| ATP-...
6565	Crassostrea virginica	1 (0.03%)	5E-43	379-568	1-191	183	48	191	gb|ABU84873.1|	mitochondrial LON protease-like protein [Crassostrea virgini...
626096	Ureaplasma urealyticum serovar 2 str. ATCC 27814	1 (0.03%)	1E-150	8-794	4-788	539	47	797	ref|YP_002284748.1|	ATP-dependent protease La [Ureaplasma urealyticum serovar 10...
550748	Ureaplasma urealyticum serovar 4 str. ATCC 27816	1 (0.03%)	1E-150	8-794	4-788	538	47	797	ref|WP_004026525.1|	Lon protease [Ureaplasma urealyticum] gb|EDY74526.1| ATP-dep...
550747	Ureaplasma urealyticum serovar 12 str. ATCC 33696	1 (0.03%)	1E-149	8-794	4-788	537	47	797	ref|WP_004027081.1|	Lon protease [Ureaplasma urealyticum] gb|EDX52991.1| ATP-dep...
400667	Acinetobacter baumannii ATCC 17978	2 (0.05%)	1E-130	304-795	1-493	473	47	494	ref|YP_001084064.1|	DNA-binding ATP-dependent protease La [Acinetobacter baumann...
417398	Vibrio cholerae MZO-2	1 (0.03%)	3E-81	474-794	1-321	310	47	322	ref|WP_000310331.1|	hypothetical protein, partial [Vibrio cholerae] gb|EDM52771....
391586	Vibrio sp. 16	2 (0.05%)	1E-163	223-794	1-572	582	46	573	ref|WP_005473336.1|	peptidase [Vibrio sp. 16] gb|EED26272.1| ATP-dependent prote...