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Job 81220 [SSGCID - MygeA.20193.a] [2018-02-01] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Chaperone protein DnaK - BATCH:81172

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

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Features and Secondary Structure  
 
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MSADNGLIIGIDLGTTNSCVSVMEGGRPVVLENPEGKRTTPSIVSYKNNEIIVGDAAKRQMVTNPNTIVSIKRLMGTSNKVKVQNADGTTKELSPEQVSAQILSYLKDFAEKKIGKKISRAVITVPAYFNDAERNATKTAGKIAGLNVERIINEPTAAALAYGIDKASREMKVLVYDLGGGTFDVSLLDIAEGTFEVLATAGDNRLGGDDWDNKIIEYISAYIAKEHQGLNLSKDKMAMQRLKEAAERAKIELSAQLETIISLPFLTVTQKGPVNVELKLTRAKFEELTKPLLERTRNPISDVIKEAKIKPEEINEILLVGGSTRMPAVQKLVESMVPGKKPNRSINPDEVVAIGAAIQGGVLRGDVKDVLLLDVTPLTLSIETLGGVATPLIKRNTTIPVSKSQIFSTAQDNQESVDVVVCQGERPMSRDNKSLGRFNLGGIQPAPKGKPQIEITFSLDANGILNVKAKDLTTQKENSITISDNGNLSEEEIQKMIRDAEANKERDNIIRERIELRNEGEGIVNTIKEILASPDAKNFPKEEKEKLEKLTGNIDAAIKANDYAKLKVEIENFKKWREEMAKKYNPTGEQGPQAK
tmhmm (0)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (4%)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXX---------------------------------------------
coiled-coils (8%)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------------------
disordered (11%)
XXXXX--XX-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXX-----------------------XXXXXXXXXX---------------------------------XXXXXXXXXXXXXXXX
psipred
-------EEEE------EEEEEEE----EE------------EEEE----EEE-HHHHHHHH------EEEEE----------------EEEE-HHHHHHHHHHHHHHHHHHH-------EEEE------HHHHHHHHHHHHH----EEEE--HHHHHHHHH---------EEEEEE-----EEEEEEEE---EEEEEE-----------HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH-----EEEEE-----------EEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--EEEEE------HHHHHHHHHHH----------HHHHHHHHHHHHHHHH------EEEEE------EEEE---EEEEEE-------EEEEEEEEE------EEEEEEEEE---HH-------EEEE-----------EEEEEEEE-----EEEEEEE-------EEEE-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    21	    0.150
  max. Y    23	    0.157
  max. S    22	    0.273
  mean S     1-22   0.145
       D     1-22   0.152    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.152 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-595     alignment     3d2eA_205     1-629   0.9017   CHAPERONE


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
662947Mycoplasma genitalium M22881 (0.03%)1E-1741-59519-613618100595ref|YP_006600337.1|molecular chaperone DnaK [Mycoplasma genitalium M6282] ref|Y...
662945Mycoplasma genitalium M63201 (0.03%)1E-1741-59519-613617100595ref|YP_006599848.1|molecular chaperone DnaK [Mycoplasma genitalium M2321] ref|Y...
2133Spiroplasma citri1 (0.03%)1E-1597-5953-58356962589emb|CAK99714.1|chaperone dnak protein [Spiroplasma citri]
428127Eubacterium dolichum DSM 39911 (0.03%)1E-1675-5753-56559560571ref|WP_004800487.1|molecular chaperone DnaK [[Eubacterium] dolichum] gb|EDP1057...
545696Holdemania filiformis DSM 120421 (0.03%)1E-1695-5871-57560159583ref|WP_006059049.1|molecular chaperone DnaK [Holdemania filiformis] gb|EEF67979...
428126Clostridium spiroforme DSM 15521 (0.03%)1E-1695-5941-58260159590ref|WP_004609338.1|molecular chaperone DnaK [[Clostridium] spiroforme] gb|EDS75...
469597Coprobacillus sp. 8_2_54BFAA1 (0.03%)1E-1685-5941-58259959590ref|WP_003536734.1|molecular chaperone DnaK [Erysipelotrichaceae] gb|EDS19394.1...
708248Mycoplasma suis KI38061 (0.03%)1E-1521-5851-57754659585ref|YP_004249707.1|chaperone protein DnaK [Mycoplasma suis KI3806] ref|WP_01360...
2698Heliobacterium chlorum1 (0.03%)2E-9910-3531-33837059345gb|AAD33463.1|DnaK protein [Heliobacterium chlorum]
654421Anoxybacillus sp. SK3-41 (0.03%)0.05-5861-57464258582ref|WP_019416888.1|molecular chaperone DnaK [Anoxybacillus] gb|EPZ38229.1| mole...
690871Anoxybacillus sp. DT3-11 (0.03%)0.05-5861-57464258582ref|WP_009374037.1|molecular chaperone DnaK [Anoxybacillus sp. DT3-1] gb|EMI099...
1216008Amphibacillus jilinensis1 (0.03%)1E-1775-5851-57362858581ref|WP_017472623.1|molecular chaperone DnaK [Amphibacillus jilinensis]
665952Bacillus smithii 7_3_47FAA1 (0.03%)1E-1775-5861-57462758582ref|WP_003355415.1|molecular chaperone DnaK [Bacillus smithii] gb|EHL73502.1| c...
393087Gracilibacillus lacisalsi1 (0.03%)1E-1745-5861-57461858582ref|WP_018931581.1|molecular chaperone DnaK [Gracilibacillus lacisalsi]
866895Halobacillus halophilus DSM 22661 (0.03%)1E-1745-5851-57361758581ref|YP_006181193.1|molecular chaperone DnaK [Halobacillus halophilus DSM 2266] ...
592010Abiotrophia defectiva ATCC 491761 (0.03%)1E-1737-5863-57561558581ref|WP_023392084.1|chaperone protein DnaK [Abiotrophia defectiva] gb|ESK65281.1...
94136Alkalibacillus haloalkaliphilus1 (0.03%)1E-1735-5851-57261558581ref|WP_017186141.1|molecular chaperone DnaK [Alkalibacillus haloalkaliphilus]
999413Clostridium innocuum 29591 (0.03%)1E-1725-5941-58261258590ref|WP_002610204.1|molecular chaperone DnaK [unclassified Erysipelotrichaceae] ...
658657Erysipelotrichaceae bacterium 21_31 (0.03%)1E-1725-5921-58061158588ref|WP_009271032.1|molecular chaperone DnaK [Erysipelotrichaceae] gb|EHO22962.1...
1235796Firmicutes bacterium M10-21 (0.03%)1E-1725-5871-57561058583ref|WP_016320117.1|chaperone dnaK [Firmicutes bacterium M10-2] gb|EOS59495.1| c...






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