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Job 81923 [SSGCID - BuviA.12797.a] [2018-03-05] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] ROK family protein - BATCH:81918

Full Structure Predictions  
Model 1

chemical/x-pdb MIME type  PDB file 		Model 2

chemical/x-pdb MIME type  PDB file 		Model 3

chemical/x-pdb MIME type  PDB file 		Model 4

chemical/x-pdb MIME type  PDB file 		Model 5

chemical/x-pdb MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

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Features and Secondary Structure  
  
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MRSPHIGQGSNSANVRRYNERLLLKTLRRAGSASKADLARLANMTGTAVGSIIASLADAKLIEFAGRTEGQRGQPASLIRLDPRGAFGIGVHLDRMRIETALVNFAGDVLGRRSHDTLLPPPAEVIEIVRHDIDAMQALLPAHERARLAGVGVAQPYNLGAWMRELGLAPDTFRAWEDVDFASDLGRTVSLPVFGENDGNAAAIAELFYGYGRQCDDFVYLFIGPAIGGGIAIDGDCLRGVTGNAGDIAMIPVLPSRLASAPPPRGPWDILLARASLHALVRHLRHHGETVESRADLEACIARGLPAVTEWIDDCVDALAPALRAVLCVVDAPVVVLDADTDAGLLDALTSRLRAALVATAPEARGTPTLVRGTFGADAGAIGAATLPMYFNFSPRAGILRGARIESQEVNHVAI
tmhmm (0) 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (10%) 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXX----------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------
coiled-coils (0%) 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (14%) 
XXXXXXXXXXXXXXXXXXX-----------------------------------------XXXXXXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXX
psipred 
-----------HHHHHHHHHHHHHHHHHH-----HHHHHHHH---HHHHHHHHHHHHH---EEEE------------EEEE-----EEEEEEE---EEEEEEEE----EEEEEEEE-----HHHHHHHHHHHHHHHHHHH-------EEEEEEEEEEEE-----EEEE------------HHHHHHHHH---EEEE-HHHHHHHHHHHH--------EEEEEE---EEEEEEE--EEEE------EEE-------------------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---EEEEE-HHHHHHHHHHHHHHHHHHHHH--------EEEE-----HHHHHHHHHHHHHHHH---HHHHHH-------------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    60	    0.134
  max. Y    36	    0.205
  max. S    29	    0.475
  mean S     1-35   0.235
       D     1-35   0.217    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.217 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-415     alignment     5f7qE_301     1-396   0.7490   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
269482Burkholderia vietnamiensis G41 (0.03%)1E-1021-4151-415379100415ref|YP_001119351.1|ROK family protein [Burkholderia vietnamiensis G4] ref|WP_01...
416344Burkholderia sp. KJ0061 (0.03%)1E-1021-4151-41537799415ref|YP_006332478.1|transcriptional regulator/sugar kinase [Burkholderia sp. KJ0...
1009846Burkholderia cepacia GG41 (0.03%)3E-941-4151-41535296415ref|YP_006616002.1|ROK family protein [Burkholderia cepacia GG4] ref|WP_0148971...
987057Burkholderia sp. TJI491 (0.03%)1E-691-2851-28627096286gb|EGD02065.1|ROK family protein [Burkholderia sp. TJI49]
1335308Burkholderia vietnamiensis AU4i1 (0.03%)2E-951-4151-41535695415ref|WP_021161552.1|Transcriptional regulator/sugar kinase [Burkholderia vietnam...
482957Burkholderia lata1 (0.03%)3E-951-4151-41535595415ref|YP_368923.1|ROK family protein [Burkholderia lata] ref|WP_011351841.1| N...
396596Burkholderia ambifaria IOP40-101 (0.03%)1E-941-4151-41535395415ref|WP_006751039.1|N-acylmannosamine kinase [Burkholderia ambifaria] gb|EDT0467...
1055524Burkholderia cenocepacia H1111 (0.03%)1E-941-4151-41535395415ref|YP_002230681.1|ROK family regulatory protein [Burkholderia cenocepacia J231...
339670Burkholderia ambifaria AMMD1 (0.03%)1E-941-4141-41435395414ref|YP_773318.1|ROK family protein [Burkholderia ambifaria AMMD] ref|WP_0116...
396597Burkholderia ambifaria MEX-51 (0.03%)1E-941-4151-41535395415ref|WP_006762174.1|N-acylmannosamine kinase [Burkholderia ambifaria] gb|EDT3777...
331272Burkholderia cenocepacia HI24241 (0.03%)4E-941-4141-41435295414ref|YP_620944.1|ROK domain-containing protein [Burkholderia cenocepacia AU 1...
398577Burkholderia ambifaria MC40-61 (0.03%)2E-941-4141-41435295414ref|YP_001808170.1|ROK family protein [Burkholderia ambifaria MC40-6] ref|WP_01...
406425Burkholderia cenocepacia MC0-31 (0.03%)5E-941-4141-41435195414ref|YP_001764817.1|ROK family protein [Burkholderia cenocepacia MC0-3] ref|WP_0...
985079Burkholderia multivorans ATCC BAA-2471 (0.03%)9E-931-4151-41634795416ref|WP_006400274.1|N-acylmannosamine kinase [Burkholderia multivorans] gb|EED99...
395019Burkholderia multivorans ATCC 176161 (0.03%)2E-921-4151-41634695416ref|YP_001579895.1|ROK family protein [Burkholderia multivorans ATCC 17616] ref...
513053Burkholderia multivorans CGD2M1 (0.03%)1E-911-4151-41634395416ref|WP_006404917.1|N-acylmannosamine kinase [Burkholderia multivorans] gb|EEE07...
985078Burkholderia multivorans CF21 (0.03%)5E-821-3621-36331195363ref|WP_006414400.1|ROK family protein, partial [Burkholderia multivorans] gb|EJ...
101571Burkholderia ubonensis1 (0.03%)3E-841-3641-36531890365ref|WP_010088976.1|ROK family protein, partial [Burkholderia ubonensis]
60550Burkholderia pyrrocinia1 (0.03%)2E-931-4156-42134989416ref|WP_017332444.1|N-acylmannosamine kinase [Burkholderia pyrrocinia]
57975Burkholderia thailandensis1 (0.03%)6E-751-3381-33928883339ref|WP_009914127.1|ROK family protein, partial [Burkholderia thailandensis]



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