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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520
	MSVEVEYLQHEDYLYRTSKLKEIRDLGINPYPYQYTDCLEVQEIRNQFVDNELGDSEAAFRKETPKVRFAGRLVLFRSMGKNSFGQILDNDAKIQVMFNRDFSAVAGLAADAGISPIKFIEKKLDLGDILGLEGYLFFTHSGELTVLVETVTLLCKSLISLPDKHAGLADKEIRYRKRWADLISSEDVRKTFLTRSRILKLIREYMDQQSFLEVETPILQTIYGGAEATPFVTTLQALHAEMFLRISLEIALKKLLVGGMSRVYEIGKVFRNEGIDRTHNPEFTMIEAYAAYWDYNDVMKCVENLVEYIVRALNNGETQVQYSHLKSGPQVVDFKAPWIRMTMKESISVYGGVDVDLHADHELRKILETQTSLPEKTYVHASRGELIALLFDELVCDKLIAPHHITDHPLETTPLCKTLRSGDETLVERFESFCLGKELCNAYSELNDPLQQRKLLEEQMRKKALNPDSEYHPIDEEFLEALCQGMPPAGGFGIGIDRLVMMLTDAASIRDVLFFPVMRRIEAKKD
tmhmm (0)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (2%)	----------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (6%)	XXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXX------------------------------------------------XXXXXXXXXXX
psipred	----------HHHHHHHHHHHHHHH---------------HHHHHHHH-----------------EEEEEEEEEEEE-----EEEEEEE---EEEEEEE----HHHHHHHHH---EEEEEEEEEE---EEEE-----------EEEEEEEEEEEE---------------HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH---EEEE---EEEE------------EE-----EEEE---HHHHHHHHH-----EEEEEEEEE----------HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH----EEEE--------EEE-------EEEHHHHHHHHH-----HHHHHHHHHHHHHHH---------------------EEEE-----------------HHH--------HHHHEEEE----EEEEEEEEEE--HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH--------EEEHHHHHHHHH-----HHHEE-------------

# SignalP-4.0 gram- predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    62	    0.106
  max. Y    62	    0.111
  max. S    11	    0.145
  mean S     1-61   0.112
       D     1-61   0.112    0.570  NO
Name=tmp_signalp_seq	SP='NO' D=0.112 D-cutoff=0.570 Networks=SignalP-noTM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-526	alignment	4up7A_302	1-529	0.8698	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
580047	Chlamydia trachomatis A2497	1 (0.03%)	1E-163	1-526	2-527	583	100	526	ref|YP_005813672.1|	lysyl-tRNA synthetase [Chlamydia trachomatis A2497] ref|WP_0...
1071753	Chlamydia trachomatis A/363	1 (0.03%)	1E-164	1-526	1-526	583	100	526	ref|YP_005156617.1|	lysyl-tRNA synthetase [Chlamydia trachomatis A2497] ref|YP_0...
759364	Chlamydia trachomatis D-LC	1 (0.03%)	1E-163	1-526	2-527	582	100	526	ref|YP_005811832.1|	lysyl-tRNA synthetase [Chlamydia trachomatis D-EC] ref|YP_00...
707186	Chlamydia trachomatis G/11222	1 (0.03%)	1E-163	1-526	1-526	582	100	526	ref|YP_005809094.1|	lysyl-tRNA synthetase [Chlamydia trachomatis G/11222] ref|WP...
813	Chlamydia trachomatis	1 (0.03%)	1E-163	1-526	1-526	582	100	526	ref|YP_008345789.1|	lysyl-tRNA synthetase [Chlamydia trachomatis RC-F(s)/852] re...
1007870	Chlamydia trachomatis RC-L2/55	1 (0.03%)	1E-163	1-526	1-526	582	100	526	ref|YP_001654241.1|	lysyl-tRNA synthetase [Chlamydia trachomatis 434/Bu] ref|YP_...
1100833	Chlamydia trachomatis F/SWFPminus	1 (0.03%)	1E-163	1-526	1-526	581	100	526	ref|YP_005810019.1|	lysyl-tRNA synthetase [Chlamydia trachomatis E/11023] ref|YP...
718219	Chlamydia trachomatis G/9301	1 (0.03%)	1E-163	1-526	1-526	581	100	526	ref|YP_005808168.1|	lysyl-tRNA synthetase [Chlamydia trachomatis G/9768] ref|YP_...
1112249	Chlamydia psittaci C6/98	1 (0.03%)	1E-160	1-526	1-526	571	77	526	ref|YP_004422660.1|	lysyl-tRNA synthetase [Chlamydia psittaci 6BC] ref|YP_005663...
1234369	Chlamydia pecorum P787	1 (0.03%)	1E-158	1-521	1-520	564	76	521	ref|YP_004376835.1|	lysyl-tRNA synthetase [Chlamydophila pecorum E58] ref|YP_008...
1003238	Chlamydophila abortus LLG	1 (0.03%)	1E-159	1-526	1-526	567	75	526	ref|WP_006344414.1|	lysyl-tRNA synthetase [Chlamydophila abortus] gb|EGK69542.1|...
406984	Chlamydophila pneumoniae LPCoLN	1 (0.03%)	1E-152	1-525	1-525	544	74	525	ref|YP_005662499.1|	lysyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN] ref|...
159254	Parachlamydia acanthamoebae str. Hall's coccus	1 (0.03%)	1E-151	1-521	1-521	542	56	523	ref|WP_006341034.1|	lysyl-tRNA synthetase [Parachlamydia acanthamoebae] gb|EFB41...
765953	Waddlia chondrophila 2032/99	1 (0.03%)	1E-153	1-521	1-525	548	55	526	ref|YP_003709717.1|	lysyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044] ref...
331113	Simkania negevensis Z	1 (0.03%)	1E-155	4-522	248-766	554	53	522	ref|YP_004672058.1|	lysyl-tRNA synthetase [Simkania negevensis Z] ref|WP_0139440...
411459	Ruminococcus obeum ATCC 29174	4 (0.1%)	1E-144	67-521	8-442	520	46	455	ref|WP_005421538.1|	lysyl-tRNA synthetase [[Ruminococcus] obeum] gb|EDM85924.1| ...
123214	Persephonella marina EX-H1	1 (0.03%)	1E-142	65-522	140-578	511	44	458	ref|YP_002731194.1|	lysyl-tRNA synthetase [Persephonella marina EX-H1] ref|WP_01...
1227351	Paenibacillus sp. FSL H8-457	1 (0.03%)	1E-174	2-522	3-499	618	43	521	gb|ETT65827.1|	lysyl-tRNA ligase [Paenibacillus sp. FSL H8-457]
908341	Paenibacillus sp. HGF5	1 (0.03%)	1E-173	2-522	9-505	616	43	521	ref|WP_009591903.1|	lysyl-tRNA synthetase [Paenibacillus sp. HGF5] gb|EGG36115.1...
481743	Paenibacillus sp. Y412MC10	3 (0.08%)	1E-174	2-522	7-503	616	43	521	ref|YP_003240190.1|	lysyl-tRNA synthetase [Paenibacillus sp. Y412MC10] ref|WP_01...