old.robetta.org

Click the icons below each image to download the prediction in PDB format ( )

Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780 . 790 . 800 . 810 . 820 . 830 . 840 . 850 . 860 . 870 . 880 . 890 . 900 . 910 . 920 . 930 . 940 . 950 . 960 . 970 . 980 . 990 . 1000 . 1010 . 1020 . 1030
	MDNEDKISISAKEEKILSFWKEQDIFQKTLDNREGCPTFSFYDGPPFATGLPHYGHLLAGTIKDVVCRYASMDGHYVPRRFGWDCHGVPVEYEVEKSLGLTEPGAIERFGVANFNEECRKIVFRYADEWKYFVDRIGRWVDFSATWRTMDLSFMESVWWVFRSLYDQGLVYEGTKVVPFSTKLGTPLSNFEAGQNYKEVDDPSVVVKFALQDNQGFLLAWTTTPWTLVSNMALAVHPELTYVRIKDKESGDEYILGQESLPRWFPDRESYEWIGQLSGKSLVGQSYEPLFPYFQDKKELEAFRILPADFIEESEGTGIVHMAPAFGEADFFACQEHNVPLVCPVDNQGCYTAEVKDFVGEYIKSADKGIARRLKNENKLFYQGTVRHRYPFCWRTDSPLIYKAVNSWFVAVEKVKSKMLKANESIHWTPEHIKQGRFGKWLEGARDWAISRNRYWGTPIPIWRSDDGELLVIGSIQELEALSGQKIVDLHRHFIDEIEINQNGKSFRRIPYVFDCWFDSGAMPYAQNHYPFERAEETEACFPADFIAEGLDQTRGWFYTLTVIAAALFDQPAFKNVIVNGIILAEDGNKMSKRLNNYPSPKMIMDAYGADALRLYLLNSVVVKAEDLRFSDKGVESVLKQVLLPLSNALAFYKTYAELYGFDPKETDNIELAEIDRWILSSLYSLVGKTRESMSQYDLHAAVNPFVDFIEDLTNWYIRRSRRRFWDAEDSADRRAAFSTLYEVLVVFSKVIAPFIPFIAEDMYQQLRGETDPESVHLCDFPHVVLEKILPDLERKMQDIREIVALGHSLRKEHKLKVRQPLQNVYIVGSKERKEALAQVGSLIGEELNVKDVHFCSETPEYVTTLIKPNFRTLGKKVGNRLPEIQRALAGLPQEQIQAFMHKGQMVVSLGEETISLDKEDITVSWASAEGFVARSSASFVAVLDCQLTEPLIMEGIARELVNKINTMRRNRKLHVSDRIAIRLHAPVIVQEAFALHKEYICEETLTTSVSVIDYKEGEEWDINGHAVSFVLERVER
tmhmm (0)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (1%)	XXXX---------------------------XX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
psipred	--------HHHHHHHHHHHHHH---HHHHHHH------EEEE-----------HHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHH-------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-----EE---HHHHHHHHHHHHHHHH---EEE--EEE-----------HHHHH---------EEEEE--------EEEEEE----HHHH--EEEE----EEEEEEE-----EEEEEHHHHHHHH------EEEEEEE--EE---EEE--------------EEEEE--EE-------HH-------HHHHHHHHH-------------EE-----------HHHHHHHHHHHHHH---EE---EEE-----------EEEE-----EEEE-HHHHHHHHHHHH--EEE-------HHHHHHH---------------EEEEEEE----EEE---HHHHHHHH-----HHHH--------------EEE---EEE----HHHHHHHHH-------HHHH-----EEEEE----HHHHHHHHHHHHHHH-------EEEE---EE----------------HHHHHHH---HHHHHHHHH---------EE-HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHEE--HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------EEEEE-----------HHHHHHHHHHHHHHHHHHHHHHH----------EEEEE--HHHHHHHHHHHHHHHHH-EEEEEEEEE------EEEEE---EEHHHHHHHHHHHHHHHHHH--HHHHHHHHH---EEEEE--EEEEE---EEEEEEEE----EEE----EEEEE-----HHHHHHHHHHHHHHHHHHHHHH-------EEEEEEE--HHHHHHHHHHHHHHHHHH---EEEE------EEEEE--EEEEEEEEE---

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    51	    0.122
  max. Y     2	    0.131
  max. S     1	    0.171
  mean S     1-1    0.171
       D     1-1    0.147    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.147 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-1036	alignment	1wz2A_204	1-948	0.5738	Ligase/RNA

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
813	Chlamydia trachomatis	5 (0.12%)	0.0	1-1036	1-1036	1244	100	1036	ref|YP_007735325.1|	isoleucyl-tRNA synthetase [Chlamydia trachomatis Ia/SotonIa1...
759364	Chlamydia trachomatis D-LC	1 (0.03%)	0.0	1-1036	6-1041	1243	100	1036	ref|YP_005811073.1|	Isoleucyl-tRNA synthetase, mupirocin resistant [Chlamydia tr...
707186	Chlamydia trachomatis G/11222	1 (0.03%)	0.0	1-1036	1-1036	1241	100	1036	ref|YP_005808292.1|	isoleucyl-tRNA synthetase [Chlamydia trachomatis G/11222] re...
707184	Chlamydia trachomatis E/150	1 (0.03%)	0.0	1-1036	1-1036	1241	100	1036	ref|YP_005813811.1|	isoleucyl-tRNA synthetase [Chlamydia trachomatis E/150] ref|...
707187	Chlamydia trachomatis G/11074	1 (0.03%)	0.0	1-1036	1-1036	1240	100	1036	ref|YP_005814738.1|	isoleucyl-tRNA synthetase [Chlamydia trachomatis G/11074] re...
718219	Chlamydia trachomatis G/9301	1 (0.03%)	0.0	1-1036	1-1036	1239	100	1036	ref|YP_005807372.1|	isoleucyl-tRNA synthetase [Chlamydia trachomatis G/9768] ref...
580049	Chlamydia trachomatis B/Jali20/OT	1 (0.03%)	0.0	1-1036	1-1036	1239	100	1036	ref|YP_002887647.1|	isoleucyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT...
580047	Chlamydia trachomatis A2497	1 (0.03%)	0.0	1-1036	6-1041	1238	100	1036	ref|YP_005812824.1|	Isoleucyl-tRNA synthetase, mupirocin resistant [Chlamydia tr...
1071753	Chlamydia trachomatis A/363	1 (0.03%)	0.0	1-1036	1-1036	1237	100	1036	ref|YP_005155854.1|	isoleucyl-tRNA synthetase, mupirocin resistant [Chlamydia tr...
1100833	Chlamydia trachomatis F/SWFPminus	1 (0.03%)	0.0	1-1036	1-1036	1245	99	1036	ref|YP_005809219.1|	isoleucyl-tRNA synthetase [Chlamydia trachomatis E/11023] re...
1071782	Chlamydia trachomatis L2b/Ams5	2 (0.05%)	0.0	1-1036	1-1036	1239	99	1036	ref|YP_001653370.1|	isoleucyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/p...
672161	Chlamydia trachomatis B/TZ1A828/OT	1 (0.03%)	0.0	1-1036	1-1036	1238	99	1036	ref|YP_002888522.1|	isoleucyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/O...
1007870	Chlamydia trachomatis RC-L2/55	2 (0.05%)	0.0	1-1036	1-1036	1237	99	1036	ref|YP_001654358.1|	isoleucyl-tRNA synthetase [Chlamydia trachomatis 434/Bu] ref...
315277	Chlamydia trachomatis A/HAR-13	1 (0.03%)	0.0	1-1036	1-1036	1236	99	1036	ref|YP_327817.1|	isoleucyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13] r...
243161	Chlamydia muridarum str. Nigg	1 (0.03%)	0.0	1-1034	1-1034	1232	89	1034	ref|NP_296667.1|	isoleucyl-tRNA synthetase [Chlamydia muridarum str. Nigg] re...
83560	Chlamydia muridarum	1 (0.03%)	0.0	1-1034	1-1034	1228	89	1034	ref|WP_010232787.1|	isoleucyl-tRNA synthase [Chlamydia muridarum]
1050221	Chlamydia psittaci NJ1	1 (0.03%)	0.0	5-1036	8-1041	1193	71	1034	ref|YP_006740785.1|	isoleucyl-tRNA synthetase [Chlamydia psittaci NJ1] ref|WP_01...
83554	Chlamydia psittaci	2 (0.05%)	0.0	5-1036	8-1041	1193	70	1034	ref|YP_004064600.1|	isoleucyl-tRNA synthetase [Chlamydia psittaci RD1] ref|WP_01...
331636	Chlamydia psittaci 6BC	1 (0.03%)	0.0	5-1036	20-1053	1193	70	1034	ref|YP_005663348.1|	isoleucyl-tRNA synthetase [Chlamydia psittaci 6BC] ref|WP_01...
1112269	Chlamydia psittaci 09DC78	1 (0.03%)	0.0	5-1036	8-1041	1192	70	1034	ref|YP_006741827.1|	isoleucyl-tRNA synthetase [Chlamydia psittaci MN] ref|YP_006...