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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410
	MQQLIDNLKKRGILDNSSAGLESLTVPVSAYLGFDPTAPSLHIGHWIGICFLRRLAAYGITPVALVGGATGMIGDPSGKSVERSLLDQAQVLDNSKKIAAALASYLPGIRIVNNADWLGSLSMVDFLRDVGKHFRLGSMLAKDVVKQRVYSEEGISYTEFSYLLLQSYDFAHLFKEHNVVLQCGGSDQWGNITSGIDYIRRRGLGQAYGLTYPLLTDSKGKKIGKTESGTIWLDPALTPPYELFQYFLRLPDQEISKVMRTLTLLDNEEIFALDERLTSDPQAVKKYIAEVIVKDVHGSEGLAQAQAATESFFASKGKSITEAELVALVESGVGVKVARADLIGKRWLDIVVELGFCSSRGQARRLIQQRGLYINQEPLADEQSILDGTQLCFDRYVLLSQGKRKKQVIDLN
tmhmm (0)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (5%)	X-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXX--X------------------------------------------------------------------------XXXXXXXXXXXXXX------------------------------------------
psipred	-HHHHHHHHH---HHHH-HHHHHH---EEEEEEE------HHHHHHHHHHHHHHHHHH---EEEEEEEEEEHH--------------HHHHHHHHHHHHHHHHHHHHHHEEE--HHHHH---HHHHHHHHHHH--HHHHHHHHHHHHHHH------HHHHHHHHHH--HHHHHHHH--EEEEE---HHHHHHHHHHHHHHHHH----EEEHHHHHHH-------------EE--HHH---HHHHHHHH---HHHHHHHHHH-----HHHHHHHHHHH---HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--------HHHHHHHHH--------HHH---HHHHHHHHH------HHHHHHHHH--EEEE--EEE--------HHH-----EEEEEE----EEEEEE-

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    31	    0.127
  max. Y    31	    0.146
  max. S     9	    0.225
  mean S     1-30   0.172
       D     1-30   0.156    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.156 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-412	alignment	1h3eA_103	1-427	0.9476	LIGASE

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
813	Chlamydia trachomatis	1 (0.03%)	1E-137	1-412	1-412	494	100	412	ref|YP_005807416.1|	tyrosyl-tRNA synthetase [Chlamydia trachomatis G/9768] ref|Y...
672161	Chlamydia trachomatis B/TZ1A828/OT	1 (0.03%)	1E-137	1-412	1-412	493	100	412	ref|YP_002888565.1|	tyrosyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]...
1100833	Chlamydia trachomatis F/SWFPminus	1 (0.03%)	1E-136	1-412	1-412	492	100	412	ref|YP_005813857.1|	tyrosyl-tRNA synthetase [Chlamydia trachomatis E/150] ref|YP...
83560	Chlamydia muridarum	1 (0.03%)	1E-135	1-405	1-405	487	87	405	ref|WP_010232117.1|	tyrosyl-tRNA synthetase [Chlamydia muridarum]
1112249	Chlamydia psittaci C6/98	1 (0.03%)	1E-131	1-411	1-411	475	68	411	ref|YP_004422276.1|	tyrosyl-tRNA synthetase [Chlamydia psittaci 6BC] ref|YP_0056...
406984	Chlamydophila pneumoniae LPCoLN	1 (0.03%)	1E-128	1-412	1-412	466	62	412	ref|YP_005661982.1|	tyrosyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN] re...
45351	Nematostella vectensis	3 (0.08%)	6E-73	1-201	1-214	281	47	214	ref|XP_001617599.1|	hypothetical protein NEMVEDRAFT_v1g157233 [Nematostella vect...
331113	Simkania negevensis Z	1 (0.03%)	1E-138	1-411	1-422	499	44	422	ref|YP_004671165.1|	tyrosyl-tRNA synthetase [Simkania negevensis Z] ref|WP_01394...
882865	Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283	1 (0.03%)	1E-146	31-409	1-385	523	43	389	ref|WP_000327754.1|	tyrosyl-tRNA ligase, partial [Salmonella enterica] gb|EGA422...
679207	Escherichia coli MS 107-1	1 (0.03%)	1E-130	2-335	8-354	471	43	348	ref|WP_001349837.1|	tyrosyl-tRNA synthetase, partial [Escherichia coli] gb|EFK48...
718254	Enterobacter cloacae subsp. cloacae NCTC 9394	1 (0.03%)	1E-130	2-335	8-354	470	43	348	ref|YP_007845204.1|	tyrosyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae...
926569	Anaerolinea thermophila UNI-1	1 (0.03%)	1E-152	1-411	1-424	545	42	424	ref|YP_004173403.1|	tyrosyl-tRNA synthetase [Anaerolinea thermophila UNI-1] ref|...
383372	Roseiflexus castenholzii DSM 13941	2 (0.06%)	1E-149	1-411	1-423	535	42	423	ref|YP_001431902.1|	tyrosyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]...
296587	Micromonas sp. RCC299	1 (0.03%)	1E-143	3-411	78-505	516	42	428	ref|XP_002504529.1|	predicted protein [Micromonas sp. RCC299] gb|ACO65787.1| pre...
619693	Prevotella sp. oral taxon 472 str. F0295	1 (0.03%)	1E-125	2-343	3-363	455	42	361	ref|WP_009236751.1|	tyrosine-tRNA ligase, partial [Prevotella sp. oral taxon 472...
146774	Callosobruchus chinensis	2 (0.06%)	1E-33	69-187	1-125	150	42	125	gb|ABU55323.1|	tyrosyl-tRNA synthetase [Callosobruchus chinensis]
1218933	Pectobacterium carotovorum subsp. carotovorum PCC21	1 (0.03%)	1E-155	2-409	4-421	554	41	422	ref|YP_006647140.1|	tyrosine tRNA synthetase [Pectobacterium carotovorum subsp. ...
941429	Shigella dysenteriae CDC 74-1112	1 (0.03%)	1E-155	2-409	4-421	554	41	422	ref|WP_005029919.1|	tyrosyl-tRNA synthetase [Shigella dysenteriae] gb|EFW49322.1...
478005	Escherichia coli O157:H7 str. EC4486	1 (0.03%)	1E-155	2-409	4-421	554	41	422	ref|WP_001302716.1|	tyrosyl-tRNA synthetase [Escherichia coli] gb|EDU78445.1| ty...
1328365	Klebsiella pneumoniae MGH 20	1 (0.03%)	1E-155	2-409	4-421	554	41	422	ref|WP_023340255.1|	tyrosyl-tRNA synthetase [Klebsiella pneumoniae] gb|ESN41799....