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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340
	MTIQEELEAVKQQFSCDVSLAHSSKDLFDVKVKYLGKKGIFRGFADQLRKYPIEQKATVGASINACKQYVEEVLLERGKAVLAKEEAEEFLKEKIDISLPGSEEAALGGKHVIKKVLDDVVDIFVRFGFCVREAPNIESEKNNFSLLNFEEDHPARQMQDTFYLDPTTVLRTHTSNVQSRELARNKPPVRIVAPGECFRNEDVSARSHVIFHQVEAFCVDKDISFSDLTSMLAGFYHIFFGRKVELRFRHSYFPFVEPGIEVDISCECHGAGCSLCKHAGWLEVAGAGMIHPNVLRKASIDPEEYSGYALGMGIERLAMLKYGISDIRLFSENDLRFLRQFS
tmhmm (0)	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (9%)	------------------------------------------------------------------------------XXXXXXXXXXXXXXXX---------------XXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (8%)	XXXX---X--------XXXXX--------------------------XXXXXXX--------------------------XXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------X
psipred	--HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHH---EEE-------HHHHHHHH----------HHHHH---------------HHHHHHH----EEEEEE--EE-----------------EEEEEEEE-HHHHHHHHHHHHHH------EEEE-------------EEEEEEE-------------EEEE------HHHHHHH--------EEEE---HHHHHHHHH---HHHHHHH--HHHHHH--

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    45	    0.107
  max. Y     3	    0.105
  max. S     1	    0.105
  mean S     1-2    0.101
       D     1-2    0.103    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.103 D-cutoff=0.450 Networks=SignalP-noTM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-80	alignment	3onjA_302	1-97	0.113500	Protein transport
	81-342	alignment	2odrD_310	1-323	0.982200	Ligase

Ginzu Domain Prediction 2
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-80	msa	3onjA_302	1-97	0.113500	--
	81-342	alignment	2odrD_310	1-323	0.982200	Ligase

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
718219	Chlamydia trachomatis G/9301	1 (0.03%)	1E-123	1-342	1-342	449	100	342	ref|YP_005808229.1|	phenylalanyl-tRNA synthetase subunit alpha [Chlamydia tracho...
1100833	Chlamydia trachomatis F/SWFPminus	1 (0.03%)	1E-124	1-342	1-342	451	99	342	ref|YP_005810082.1|	phenylalanyl-tRNA synthetase subunit alpha [Chlamydia tracho...
1007870	Chlamydia trachomatis RC-L2/55	1 (0.03%)	1E-123	1-342	1-342	447	99	342	ref|YP_001654298.1|	phenylalanyl-tRNA synthetase subunit alpha [Chlamydia tracho...
406984	Chlamydophila pneumoniae LPCoLN	1 (0.03%)	1E-119	1-342	1-339	433	70	342	ref|YP_005662424.1|	phenylalanyl-tRNA synthetase subunit alpha [Chlamydophila pn...
525372	Sphingobacterium spiritivorum ATCC 33300	1 (0.03%)	5E-69	182-341	1-161	268	55	161	ref|WP_003008813.1|	phenylalanyl-tRNA synthetase subunit alpha [Sphingobacterium...
765952	Parachlamydia acanthamoebae UV-7	1 (0.03%)	1E-129	1-341	1-339	466	53	342	ref|YP_004652065.1|	phenylalanyl-tRNA synthetase subunit alpha [Parachlamydia ac...
422289	Beggiatoa sp. PS	1 (0.03%)	1E-116	77-342	2-266	424	50	267	gb|EDN66643.1|	Phenylalanyl-tRNA synthetase, class IIc [Beggiatoa sp. PS]
765953	Waddlia chondrophila 2032/99	1 (0.03%)	1E-130	3-341	1-339	472	49	340	ref|YP_003709284.1|	phenylalanyl-tRNA synthetase alpha chain [Waddlia chondrophi...
374675	Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)	2 (0.06%)	1E-45	208-341	2-123	190	49	134	gb|EAT14097.1|	phenylalanyl-tRNA synthetase alpha chain [Candidatus Sulcia ...
1630	Kandleria vitulina	1 (0.03%)	1E-50	160-287	1-131	206	48	131	emb|CAJ33111.1|	phenylalanyl-tRNA synthase alpha subunit [Kandleria vitulina...
1117647	Simiduia agarivorans SA1 = DSM 21679	1 (0.03%)	1E-151	5-341	2-337	540	47	338	ref|YP_006915499.1|	phenylalanyl-tRNA ligase subunit alpha [Simiduia agarivorans...
746360	Pseudomonas fluorescens WH6	1 (0.03%)	1E-148	5-341	2-337	530	47	338	ref|WP_003174974.1|	phenylalanyl-tRNA synthetase [Pseudomonas fluorescens] gb|EF...
61598	Lamprocystis purpurea	1 (0.03%)	1E-140	26-342	28-343	503	47	318	ref|WP_020503351.1|	phenylalanyl-tRNA synthetase [Lamprocystis purpurea]
768671	Thiocapsa marina 5811	1 (0.03%)	1E-136	28-342	30-343	490	47	316	ref|WP_007194182.1|	phenylalanyl-tRNA synthetase [Thiocapsa marina] gb|EGV17278....
289376	Thermodesulfovibrio yellowstonii DSM 11347	1 (0.03%)	1E-132	10-341	5-334	476	47	333	ref|YP_002249217.1|	phenylalanyl-tRNA synthetase subuit alpha [Thermodesulfovibr...
375063	Haemophilus influenzae 22.4-21	2 (0.06%)	1E-93	116-341	2-216	350	47	226	ref|WP_005671451.1|	phenylalanyl-tRNA synthetase subunit alpha [Haemophilus infl...
228229	Lactobacillus saerimneri	1 (0.03%)	2E-60	160-305	1-150	239	47	150	emb|CAJ33069.1|	phenylalanyl-tRNA synthase alpha subunit [Lactobacillus saer...
105612	Lactobacillus algidus	1 (0.03%)	8E-59	160-305	1-150	234	47	150	emb|CAK22323.1|	phenylalanyl-tRNA synthase alpha subunit [Lactobacillus algi...
231233	Streptococcus devriesei	1 (0.03%)	4E-59	160-306	1-151	234	47	151	emb|CAK30101.1|	phenylalanyl-tRNA synthase alpha subunit [Streptococcus devr...
99822	Streptococcus dysgalactiae subsp. dysgalactiae	2 (0.06%)	1E-58	160-306	1-151	233	47	151	emb|CAK30068.1|	phenylalanyl-tRNA synthase alpha subunit [Streptococcus dysg...