old.robetta.org

Click the icons below each image to download the prediction in PDB format ( )

Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780 .
	MLVPLSLLQKFFSSPLSIEEILQACDRIGIEAECSNVFPDSLNTVVTGKILSASPHPDAERLTVAIVFDGKGERQIICGAPNCRAGIIVPIALPGAKLRNASGEITTIKKAKIRGLESQGMCCGADELGFPHLQKAERGIFEFPADTPLGESACMLLAGAPLECSLTPNLGHCASLLGLAREISFLSPVSLNIPEEFSFASLPQETSICDMHDAGACPVFYSVKISGLSCRRSPEYLQAALTALGQKPLNAIVDITNYVMLSLGQPLHAYDSQAVEQKSLHAATLQSAQPLTLLNQETYTLPAGSLVVADQHNILGLAGVMGSAASSCSENTTEIILEAAYFQPQAVRKYQRTIQLHTEAAYRFTRGVDPQGVLPVLHAAIHMIQSLFPDAQISPIQKIGDDSFSPLSLSVRPKTIKRLLDIELSTAEIVAKLSSLGFQTAVEEQAVRVEVPSYRHDIQEETDLVEEICRTTPFVQKTQKILPTYTPIYSLKRELTAFLANGGLQQFFTYSLLDTEVSSLSLQESSLIPVQNSSWKLRDSLLPGMLKSAATNLHRQAPYVYAFEIGNVYSKEQNRYQEEERVAILLSRQVMDDSWQGKTPLSFYTIKGWVEKLLCQSGASIEDFSLQPSQHPNFHPYQQAALYQKKHLLGIFGTLHPQLCRKAQIKHDVVFAELSLNVLLSLKKKSGPHYVPYPIYPASSRDITITIDRDLPADLVRRELLSFESKWLESVHIVSVYQGRDSASQSKNVSLRMVFRDHERTLSGQEIEEEYERLTALLDKKLANIGQGNS
tmhmm (0)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (3%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------
coiled-coils (3%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX------
disordered (2%)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXX
psipred	----HHHHHHHH-----HHHHHHHHHHH----EEEEE-------EEEEEEEEEEE------EEEEEEE----EEEEE-----EE---EEEEEE--EE-------EEEEEE-----EEE--EEEE---------------------------------------------HHHHHHHHHHHHHHHHHH--------------------EEEE-------EEEEEEE--------HHHHHHHHHH---------HHHHHHHHHH---------HHH-----EEEEE-----EEEE---EEEE-----EEEEE----EEE---------EE-----EEEEEE----HHHHHHHHHHH----HHHHHHHH-------HHHHHHHHHHHHHH--------EEEEE-------EEEEEHHHHHHH------HHHHHHHHHH---EEEE---EEEEE------------HHHHHHHHH---------------HHHHHHHHHHHHHHH---EEEEE-----HHHHH-------------HHHHHH-----HHHHHHHHHH--------EEEEEEEEE-------HHHHHHHHHH---------------HHHHHHHHHHHHHH------EEEE------------EEEEEE--EEEEEEEEE-HHHHHHH-----EEEEEEHHHHHH-------------------EEEEEEEE-----HHHHHHHHHHH----EEEEEEEEEE---------EEEEEEEEEE-------HHHHHHHHHHHHHHHHHHH-EEE----

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    25	    0.142
  max. Y    25	    0.200
  max. S     8	    0.468
  mean S     1-24   0.320
       D     1-24   0.247    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.247 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-790	alignment	3pcoB_302	1-795	0.8135	LIGASE

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
718219	Chlamydia trachomatis G/9301	1 (0.03%)	0.0	1-790	1-790	736	100	790	ref|YP_005807841.1|	phenylalanyl-tRNA synthetase subunit beta [Chlamydia trachom...
813	Chlamydia trachomatis	1 (0.03%)	0.0	1-790	1-790	736	100	790	ref|YP_007735790.1|	phenylalanyl-tRNA synthetase subunit beta [Chlamydia trachom...
707187	Chlamydia trachomatis G/11074	1 (0.03%)	0.0	1-790	1-790	735	100	790	ref|YP_005815208.1|	phenylalanyl-tRNA synthetase subunit beta [Chlamydia trachom...
1100833	Chlamydia trachomatis F/SWFPminus	1 (0.03%)	0.0	1-790	1-790	731	99	790	ref|YP_005809693.1|	phenylalanyl-tRNA synthetase subunit beta [Chlamydia trachom...
1007870	Chlamydia trachomatis RC-L2/55	1 (0.03%)	0.0	1-790	1-790	729	99	790	ref|YP_001654807.1|	phenylalanyl-tRNA synthetase subunit beta [Chlamydia trachom...
406984	Chlamydophila pneumoniae LPCoLN	1 (0.03%)	0.0	1-780	1-781	685	54	782	ref|YP_005661748.1|	phenylalanyl-tRNA synthetase subunit beta [Chlamydophila pne...
354	Azotobacter vinelandii	1 (0.03%)	2E-47	1-166	1-159	198	36	166	gb|AAL87035.1|AF332624_6	phenylalanyl-tRNA-synthetase beta-subunit, partial [Azotobac...
391612	Cyanothece sp. CCY0110	1 (0.03%)	3E-11	44-122	2-78	78	35	81	ref|WP_008277068.1|	phenylalanyl-tRNA synthetase, beta subunit [Cyanothece sp. C...
367791	Flammeovirga yaeyamensis	1 (0.03%)	5E-65	24-270	1-256	256	34	259	gb|ACA05089.1|	phenylalanyl-tRNA synthetase beta subunit [Flammeovirga yaey...
1256210	Lactobacillus paracasei subsp. paracasei Lpp37	1 (0.03%)	2E-25	18-153	72-199	125	34	140	ref|YP_001987869.1|	Phenylalanyl-tRNA synthetase (subunit beta) [Lactobacillus c...
135193	Paenibacillus daejeonensis	1 (0.03%)	0.0	1-787	1-812	902	32	819	ref|WP_020617596.1|	hypothetical protein [Paenibacillus daejeonensis]
572545	Clostridium thermocellum DSM 2360	2 (0.05%)	1E-135	1-404	1-407	489	32	411	ref|WP_003519410.1|	B3/4 domain protein [Clostridium thermocellum] gb|EEU00198.1...
1232203	Bacillus thuringiensis serovar aizawai str. Leapi01	1 (0.03%)	2E-30	18-153	72-199	141	32	136	ref|WP_002001249.1|	tRNA-binding protein [Bacillus cereus group] gb|EEK48289.1| ...
526970	Bacillus cereus BGSC 6E1	1 (0.03%)	4E-30	18-153	72-199	140	32	136	ref|WP_002003682.1|	tRNA-binding protein [Bacillus cereus] gb|EEK54168.1| hypoth...
1036674	Idiomarina sp. A28L	1 (0.03%)	0.0	1-787	1-794	934	31	807	ref|WP_007420404.1|	phenylalanyl-tRNA synthetase [Idiomarina sp. A28L] gb|EGN749...
301148	Caldibacillus debilis	1 (0.03%)	0.0	1-787	1-801	904	31	809	ref|WP_020153722.1|	hypothetical protein [Caldibacillus debilis]
717606	Paenibacillus curdlanolyticus YK9	1 (0.03%)	0.0	1-787	1-812	898	31	819	ref|WP_006037259.1|	phenylalanyl-tRNA synthase subunit beta [Paenibacillus curdl...
997346	Desmospora sp. 8437	1 (0.03%)	0.0	1-787	1-807	896	31	814	ref|WP_009708084.1|	phenylalanyl-tRNA synthase subunit beta [Desmospora sp. 8437...
51173	Ureibacillus thermosphaericus	1 (0.03%)	0.0	1-787	1-801	889	31	809	ref|WP_016837175.1|	phenylalanyl-tRNA synthase subunit beta [Ureibacillus thermo...
631362	Thiorhodovibrio sp. 970	1 (0.03%)	0.0	1-787	1-792	879	31	805	ref|WP_009151346.1|	phenylalanyl-tRNA synthetase [Thiorhodovibrio sp. 970] gb|EI...