old.robetta.org

Click the icons below each image to download the prediction in PDB format ( )

Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100
	MVQVVSQENFADSIASGLVLIDFFAEWCGPCKMLTPVLEALAAELPHVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVERSVGLKDKDSLIKLISKHQ
tmhmm (0)	------------------------------------------------------------------------------------------------------
low complexity (0%)	------------------------------------------------------------------------------------------------------
coiled-coils (0%)	------------------------------------------------------------------------------------------------------
disordered (4%)	X--------------------------------------------------------------------------------------------------XXX
psipred	-EEE--HHHHHHHH----EEEEEE----HHHHHHHHHHHHHHHH----EEEEEE----HHHHHH-------EEEEEE--EEEEEEE----HHHHHHHHHH--

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    43	    0.219
  max. Y    43	    0.180
  max. S    42	    0.239
  mean S     1-42   0.116
       D     1-42   0.155    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.155 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-102	alignment	4x43A_201	1-106	0.9902	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
813	Chlamydia trachomatis	1 (0.03%)	3E-35	1-102	1-102	153	100	102	ref|NP_220054.1|	Thioredoxin [Chlamydia trachomatis D/UW-3/CX] ref|YP_328362....
580049	Chlamydia trachomatis B/Jali20/OT	1 (0.03%)	2E-35	1-102	1-102	153	99	102	ref|YP_002888162.1|	thioredoxin [Chlamydia trachomatis B/Jali20/OT] ref|WP_01272...
1100833	Chlamydia trachomatis F/SWFPminus	1 (0.03%)	5E-35	1-102	1-102	152	99	102	ref|YP_005809761.1|	thioredoxin [Chlamydia trachomatis E/11023] ref|YP_005814351...
243161	Chlamydia muridarum str. Nigg	1 (0.03%)	8E-36	1-102	1-102	155	91	102	ref|NP_297199.1|	thioredoxin [Chlamydia muridarum str. Nigg] ref|WP_010231695...
1112249	Chlamydia psittaci C6/98	1 (0.03%)	1E-35	1-101	1-101	154	80	101	ref|YP_004421941.1|	thioredoxin [Chlamydia psittaci 6BC] ref|YP_005662778.1| thi...
1003238	Chlamydophila abortus LLG	1 (0.03%)	2E-35	1-101	1-101	153	79	101	ref|YP_219511.1|	thioredoxin [Chlamydophila abortus S26/3] ref|WP_006343754.1...
227941	Chlamydophila caviae GPIC	1 (0.03%)	2E-34	1-101	1-101	150	77	101	ref|NP_828954.1|	thioredoxin [Chlamydophila caviae GPIC] ref|WP_011006053.1| ...
264202	Chlamydophila felis Fe/C-56	1 (0.03%)	3E-35	1-101	1-101	153	76	101	ref|YP_515841.1|	thioredoxin [Chlamydophila felis Fe/C-56] ref|WP_011458469.1...
1238235	Chlamydia psittaci 10_881_SC42	1 (0.03%)	4E-35	1-101	1-101	153	74	101	ref|WP_020359184.1|	thioredoxin [Chlamydia psittaci] gb|EPP38620.1| thioredoxin ...
182082	Chlamydophila pneumoniae TW-183	1 (0.03%)	2E-35	1-101	1-101	153	72	101	ref|NP_224855.1|	thioredoxin [Chlamydophila pneumoniae CWL029] ref|NP_300715....
1238237	Chlamydia psittaci 10_1398_11	1 (0.03%)	6E-35	1-101	1-101	152	72	101	ref|WP_020370800.1|	thioredoxin [Chlamydia] gb|EPP34659.1| thioredoxin [Chlamydi...
1234367	Chlamydia pecorum PV3056/3	1 (0.03%)	2E-33	1-101	1-101	147	72	101	ref|YP_008581405.1|	thioredoxin [Chlamydia pecorum PV3056/3] ref|WP_021756336.1|...
406984	Chlamydophila pneumoniae LPCoLN	1 (0.03%)	8E-35	1-101	1-101	151	71	101	ref|YP_005661681.1|	thioredoxin [Chlamydophila pneumoniae LPCoLN] ref|WP_0145175...
1234369	Chlamydia pecorum P787	1 (0.03%)	4E-33	1-101	1-101	146	71	101	ref|YP_004377088.1|	thioredoxin [Chlamydophila pecorum E58] ref|YP_008582326.1| ...
910310	Turicibacter sp. HGF1	2 (0.05%)	7E-34	2-102	3-104	148	57	102	ref|WP_006785250.1|	thioredoxin [Turicibacter] gb|EFF63208.1| thioredoxin [Turic...
1235795	Paenibacillus barengoltzii G22	1 (0.03%)	3E-35	2-102	3-105	153	51	103	ref|WP_009224820.1|	thioredoxin [Paenibacillus] gb|EES73349.1| thioredoxin [Paen...
1006007	Bacillus megaterium WSH-002	1 (0.03%)	3E-35	2-101	3-103	153	51	101	ref|YP_003565165.1|	thioredoxin [Bacillus megaterium QM B1551] ref|YP_003599888....
135193	Paenibacillus daejeonensis	1 (0.03%)	2E-32	1-98	1-99	144	51	99	ref|WP_020619447.1|	thioredoxin [Paenibacillus daejeonensis]
716544	Waddlia chondrophila WSU 86-1044	2 (0.05%)	2E-29	2-98	5-102	133	51	98	ref|YP_003709886.1|	thioredoxin-related protein [Waddlia chondrophila WSU 86-104...
1132442	Bacillus sp. 37MA	1 (0.03%)	4E-35	2-101	3-103	153	50	101	ref|WP_018394107.1|	thioredoxin [Bacillus sp. 37MA]