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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780 . 790 . 800 . 810 .
	MNSTNNTDSQNLDPNASEVEKLLDESAEAEEKVDDHTPPSELFILPLNKRPFFPGMAAPLLIEAGPHYEVLTLLAKSSQKHIGLVLTKKEDANTLKVGFNQLHRVGVSARILRIMPIEGGSAQVLLSIEDRIRIVKPIQDKYLKAKVSYHKENKELTEELKAYSISIVSIIKDLLKLNPLFKEELQIFLGHSDFTEPGKLADFSVALTTATREELQEILETTDMHDRIDKALVLLKKELDLSRLQSSINQKIEATITKSQKEFFLKEQLKTIKKELGLEKDDHAVDLEKFMERFNKRDVPQYAMDVIQDEMDKLQTLETSSAEYAVCRNYLDWLTIVPWGIQTKEYHDLKKAESILNKDHYGLEDIKQRILELISVGKLANGMKGSIICLVGPPGVGKTSIGRSIAKVLHRKFFRFSVGGMRDEAEIKGHRRTYIGAMPGKLVQALKQSQIMNPVIMIDEVDKIGSSYHGDPASALLEVLDPEQNKDFLDHYLDVRVDLSNVLFILTANVLDSIPDPLLDRMEVLRLSGYILEEKLQIATKYLVPRARKEMGLSAQNVTFQPEALKHMINNYAREAGVRTLNENIKKVLRKVALKIVQNQEKNLSKKSRFTITPKNLQDYLGKPVFSSDRFYEKTPVGVATGLAWTSLGGATLYIESVQVPSSSGKADMHLTGQAGDVMKESSQIAWTYLHSALERYAPGQPFFEKSQVHIHIPEGATPKDGPSAGITMVTSLLSLLLDVPVLNNLGMTGELTLTGRVLGIGGIREKLIAARRSKLNILIFPEDNRRDYDELPAYLKKGLKVHFVTHYDDVFKIAFPGV
tmhmm (0)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (2%)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXX-------------------------------------------------------------------------
coiled-coils (0%)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (15%)	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------XXXXX---------------------------------------------------XXXXXXXXXXXXXX----------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXX---------------XXXXXXXXXXX---XX--XXXXXXXXXXXXXXXXXXXXXXXXXX-X---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------X------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
psipred	----------------------------------------EEEEEE----EE-----EEEEE--HHHHHHHHHHHH----EEEEEEEE----------HHHHHH---EEEEEEEEE-----EEEEEEEEEEEEEEE------EEEEEE---------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH--HHHHHHHHHHHHH-----HHHEEE------HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---------HHHHHHHHHHH---------HHHHHHHHHHH------HHHHHHHHHHHHHHHHH-------EEEEE--------HHHHHHHHH----EEEEE-----------------------HHHHHHH------------------------HHH-----------------EE---------EEEE-----------HH----EEEE----HH----HHHHH--HHHHHH----HHH---HHHHHHHHHHHH---------HHHHHHH-------------------------HHH------------------------EEEEEE---------EEEEE-------EEEEEE---HHHHHHHHHHHHHHHHHHHHH------HHH--EEEE------------HHHHHHHHHHHHH--------EEEEEEE-----EE-HHHHHHHHHHHHH----EEEE-HHHHHHHHHHHHHHH---EEEEE--HHHHHHHHH---
sam	------------------------------------------EEEE----------EEEEEE--HHHHHHHHHHHHH---EEEEEEEE----------HHHHHHH-EEEEEEEE-------EEEEEEEEEEEEEEEE------EEEEEEEE------HHHHHHHHHHHHHHHHHHHH-----HHHHHHH-------HHHHHHHHHHHH---HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH-------HHH--HHHHHHHHHHH----HHHHHHHHHHHHHHHH-----EEEEEEE------HHHHHHHHHHHH---EEEEEE-----HHH------E-----HHHHHHHHHHH-----EEEEE------------HHHHHHH---HHHHHH-----------HHHHEEEEE-------------HHHHHH-----HHHHHHHHHHH--HHHHHHH---HH-EE--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH----------EEEEHH-HHHHH--------HHH------EEEEHEE------EEEEEEEEE--------EEEEE----H-HHHHHHHHHHHHHHHHHH---HHH----EEEEE----------HHHHHHHHHHHHHHHH-------EEEEEEEEEEEEEEE---HHHHHHHHHHH---EEEE----HHHHHHHHHHHHH---EEEE--HHHHHHHHH---
jufo	-----------------------------------------EEEEEE--------EEEEEEE--HHHHHHHHHHHHH---EEEEEEE-------------------EEEEEEE--------EEEEEEEHHHHHHH-------EEE-------------HHHHHHHHHHHHHHHHHHH----HHHHHHHH---------HHHHHHHH-----HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH--------------HHHHHHHHHHH---HHHHHHHHHHHHHH--------HHHHHHHHHHHHHH-----------HHHHHH----------HHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHH--EEEE-----------------------EEHHHHH-------EEE--------------------------------------------EEEEEE-------------------------HHHHHHH--------HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------EE--------EEEEEEE-------EEEEEEEE------EEEEE----------HHHHHHHH---------------------------------HHHHHHHHHHHHHHH-------EEEEEEE------EE-HHHHHHHHHHHHH-EEEEEEE--HHHHHHHHHHHH---EEEEEEEEHHHHHHHHHH--

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    30	    0.228
  max. Y    30	    0.153
  max. S     9	    0.164
  mean S     1-29   0.110
       D     1-29   0.136    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.136 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-278	alignment	5fqdB_306	1-381	0.827400	--
	279-819	alignment	4fwgA_106	1-594	0.966000	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
1100833	Chlamydia trachomatis F/SWFPminus	1 (0.03%)	0.0	1-819	1-819	767	100	819	ref|YP_005809554.1|	ATP-dependent protease La [Chlamydia trachomatis E/11023] re...
1007870	Chlamydia trachomatis RC-L2/55	1 (0.03%)	0.0	1-819	1-819	767	100	819	ref|YP_001654674.1|	ATP-dependent protease La [Chlamydia trachomatis 434/Bu] ref...
1112249	Chlamydia psittaci C6/98	1 (0.03%)	0.0	1-819	1-817	736	88	819	ref|YP_004422170.1|	ATP-dependent protease La [Chlamydia psittaci 6BC] ref|YP_00...
1003238	Chlamydophila abortus LLG	1 (0.03%)	0.0	1-819	1-817	735	88	819	ref|WP_006343964.1|	Lon protease [Chlamydophila abortus] gb|EGK69083.1| putative...
1234367	Chlamydia pecorum PV3056/3	1 (0.03%)	0.0	1-817	1-815	733	87	817	ref|YP_004377321.1|	ATP-dependent protease La [Chlamydophila pecorum E58] ref|YP...
331113	Simkania negevensis Z	1 (0.03%)	0.0	6-818	16-835	709	67	822	ref|YP_004672422.1|	lon protease [Simkania negevensis Z] ref|WP_013944397.1| Lon...
765952	Parachlamydia acanthamoebae UV-7	1 (0.03%)	0.0	14-817	11-826	693	67	818	ref|YP_004651108.1|	lon protease [Parachlamydia acanthamoebae UV-7] ref|WP_00634...
716544	Waddlia chondrophila WSU 86-1044	1 (0.03%)	0.0	26-818	22-822	666	66	803	ref|YP_003709797.1|	Lon ATP-dependent protease [Waddlia chondrophila WSU 86-1044...
6565	Crassostrea virginica	1 (0.03%)	1E-45	392-580	1-190	191	63	190	gb|ABU84873.1|	mitochondrial LON protease-like protein [Crassostrea virgini...
6182	Schistosoma japonicum	1 (0.03%)	8E-39	702-816	12-126	169	56	115	gb|AAW25519.1|	SJCHGC03265 protein [Schistosoma japonicum]
554373	Moniliophthora perniciosa FA553	1 (0.03%)	1E-64	232-491	3-244	255	54	260	ref|XP_002397137.1|	hypothetical protein MPER_02490 [Moniliophthora perniciosa F...
281689	Desulfuromonas acetoxidans DSM 684	1 (0.03%)	0.0	7-816	1-800	696	53	812	ref|WP_006002905.1|	Lon protease [Desulfuromonas acetoxidans] gb|EAT14382.1| ATP...
7220	Drosophila erecta	1 (0.03%)	1E-173	143-819	297-978	614	52	688	ref|XP_001973361.1|	GG13389 [Drosophila erecta] gb|EDV52387.1| GG13389 [Drosophi...
7245	Drosophila yakuba	2 (0.05%)	1E-172	143-819	291-972	612	52	688	ref|XP_002095591.1|	GE22482 [Drosophila yakuba] gb|EDW95303.1| GE22482 [Drosophi...
7240	Drosophila simulans	1 (0.03%)	1E-171	143-819	294-975	611	52	688	ref|XP_002085513.1|	GD12266 [Drosophila simulans] gb|EDX11098.1| GD12266 [Drosop...
7227	Drosophila melanogaster	1 (0.03%)	1E-172	143-819	312-993	611	52	688	ref|NP_730435.2|	Lon protease, isoform C [Drosophila melanogaster] sp|Q7KUT2....
7238	Drosophila sechellia	1 (0.03%)	1E-171	143-819	294-975	609	52	688	ref|XP_002043593.1|	GM17358 [Drosophila sechellia] gb|EDW49804.1| GM17358 [Droso...
7222	Drosophila grimshawi	1 (0.03%)	1E-170	143-818	293-970	606	52	684	ref|XP_001985221.1|	GH14623 [Drosophila grimshawi] gb|EDV97569.1| GH14623 [Droso...
7217	Drosophila ananassae	1 (0.03%)	1E-169	143-818	297-977	601	52	687	ref|XP_001958051.1|	GF10722 [Drosophila ananassae] gb|EDV40857.1| GF10722 [Droso...
7230	Drosophila mojavensis	1 (0.03%)	1E-171	143-818	251-928	607	51	684	ref|XP_002008467.1|	GI13511 [Drosophila mojavensis] gb|EDW18943.1| GI13511 [Dros...