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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340
	MKKKRVLTGDRPTGKLHLGHWIGSIMNRLQLQNDSRYDCFFIIADLHTLTTKTRKEEILQIDNHIYDVLADWLSVGIDPEKSAIYLQSAIPEIYELNLIFSMLTPLNHIMGIPSIKEMARNASLNEESLSHGLIGYPVLQSADILLAKAHLVPVGKDNEAHVELTRDIAKTFNRLYGEVFPEPDILQGELTALVGTNGQGKMSKSANNAIYLSDDAKTVQEKIRKLYTDPNRIHATTPGRVEGNPLFIYHDLFNPHKEEVEEFKTRYRQGCIRDVEVKARLAEEINLFLNPFREKRSELVAQPKFLEEALQQGTEKMRTVARETMEEVHDHLGLSRKWRTILASSK
tmhmm (0)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (1%)	XX-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXX
psipred	----EEEEEE-------HHHHHHHHHHHHHHHHH----EEEEEE--HHHH-----HHHHHHHHHHHHHHHHHHHH------EEEEE----HHHHHHHHHHHHH-HHHHHHH--HHHHHHHHH---------------------------------HHHHHHHHHHHHHHHHH-----------EE-----------------------EEE-----HHHHHH----------EEE---------HHHHHHHH----HHHHHHHHHHHH-------HHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    38	    0.116
  max. Y     2	    0.186
  max. S     2	    0.381
  mean S     1-1    0.350
       D     1-1    0.250    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.250 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-346	alignment	1yi8C_201	1-332	0.9405	LIGASE

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
813	Chlamydia trachomatis	1 (0.03%)	1E-114	1-346	1-346	418	100	346	ref|NP_220100.1|	Tryptophanyl tRNA Synthetase [Chlamydia trachomatis D/UW-3/C...
1071753	Chlamydia trachomatis A/363	1 (0.03%)	1E-114	1-346	1-346	417	100	346	ref|YP_002889090.1|	tryptophanyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A82...
1100833	Chlamydia trachomatis F/SWFPminus	1 (0.03%)	1E-113	1-346	1-346	415	99	346	ref|YP_006360523.1|	tryptophanyl-tRNA synthetase [Chlamydia trachomatis F/SW4] r...
1262673	Chlamydia trachomatis L2/434/Bu(f)	1 (0.03%)	1E-113	1-346	25-370	415	99	346	gb|AGJ64963.2|	tryptophanyl-tRNA synthase [Chlamydia trachomatis L2/434/Bu(...
1007871	Chlamydia trachomatis RC-J/971	1 (0.03%)	1E-113	1-346	1-346	415	99	346	ref|YP_001654918.1|	tryptophanyl-tRNA synthetase [Chlamydia trachomatis 434/Bu] ...
1100832	Chlamydia trachomatis E/C599	1 (0.03%)	1E-112	1-346	1-346	411	99	346	ref|YP_005809808.1|	tryptophanyl-tRNA synthetase [Chlamydia trachomatis E/11023]...
243161	Chlamydia muridarum str. Nigg	1 (0.03%)	1E-113	1-346	1-346	414	94	346	ref|NP_297247.1|	tryptophanyl-tRNA synthetase [Chlamydia muridarum str. Nigg]...
1112249	Chlamydia psittaci C6/98	1 (0.03%)	1E-109	2-342	3-343	402	80	341	ref|YP_004422778.1|	tryptophanyl-tRNA synthetase [Chlamydia psittaci 6BC] ref|YP...
1218357	Chlamydia psittaci M56	1 (0.03%)	1E-107	2-342	3-343	396	80	341	ref|YP_006737887.1|	tryptophanyl-tRNA synthetase [Chlamydia psittaci M56] ref|WP...
1112248	Chlamydia psittaci C1/97	1 (0.03%)	1E-109	2-342	3-343	402	79	341	ref|YP_006740042.1|	tryptophanyl-tRNA synthetase [Chlamydia psittaci CP3] ref|YP...
1112270	Chlamydia psittaci 09DC79	1 (0.03%)	1E-109	2-342	3-343	401	79	341	ref|WP_016966541.1|	tryptophan--tRNA ligase [Chlamydia psittaci] gb|EPJ25237.1| ...
1218355	Chlamydia psittaci VS225	1 (0.03%)	1E-109	2-342	3-343	401	79	341	ref|YP_006735798.1|	tryptophanyl-tRNA synthetase [Chlamydia psittaci VS225] ref|...
218497	Chlamydophila abortus S26/3	1 (0.03%)	1E-108	2-342	3-343	398	79	341	ref|YP_220315.1|	tryptophanyl-tRNA synthetase [Chlamydophila abortus S26/3] r...
1003238	Chlamydophila abortus LLG	1 (0.03%)	1E-107	2-342	3-343	396	79	341	ref|WP_006344530.1|	tryptophanyl-tRNA synthase [Chlamydophila abortus] gb|EGK696...
1238237	Chlamydia psittaci 10_1398_11	1 (0.03%)	1E-112	2-343	3-344	413	78	342	ref|WP_020370661.1|	tryptophan--tRNA ligase [Chlamydia] gb|EPP34673.1| tryptopha...
1234367	Chlamydia pecorum PV3056/3	1 (0.03%)	1E-111	2-345	3-346	410	78	344	ref|YP_008582202.1|	tryptophanyl-tRNA synthetase [Chlamydia pecorum PV3056/3] re...
227941	Chlamydophila caviae GPIC	1 (0.03%)	1E-107	2-342	3-343	394	78	341	ref|NP_829822.1|	tryptophanyl-tRNA synthetase [Chlamydophila caviae GPIC] ref...
264202	Chlamydophila felis Fe/C-56	1 (0.03%)	1E-105	3-342	4-343	389	78	340	ref|YP_514970.1|	tryptophanyl-tRNA synthetase [Chlamydophila felis Fe/C-56] r...
1234369	Chlamydia pecorum P787	1 (0.03%)	1E-112	2-345	3-346	410	77	344	ref|YP_008583127.1|	tryptophanyl-tRNA synthetase [Chlamydia pecorum W73] ref|YP_...
331635	Chlamydophila pecorum E58	1 (0.03%)	1E-111	2-345	3-346	410	77	344	ref|YP_004376957.1|	tryptophanyl-tRNA synthetase [Chlamydophila pecorum E58] ref...