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Job 82026 [SSGCID - ChtrB.17901.a] [2018-03-09] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Peptide chain release factor 1 (RF-1) - BATCH:82003

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

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Features and Secondary Structure  
 
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MEIKVLECLKRLEEVEKQISDPNIFSNPKEYSSLSKEHARLSEIKNAHESLVATKKILQDDKLALSTEKDPEIVAMLEEGVLVGEEAVERLSKQLENLLIPPDPDDDLSVIMELRAGTGGDEAALFVGDCVRMYHLYAASKGWQCEVLSTSESDLGGYKEYVMGISGASVKRFLQYEAGTHRVQRVPETETQGRVHTSAVTVAVLPEPAEDDEEVFIDEKDLRIDTFRSSGAGGQHVNVTDSAVRITHIPSGVVVTCQDERSQHKNKAKAMRVLKARIRDAEVQKRAQEASAMRSAQVGSGDRSERIRTYNFPQNRVTDHRIGLTLYNLDRVMEGELDMITTALVTHVHRQLFGHEETA
tmhmm (0)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (6%)
-------------------------------------------------------------------------XXXXXXXXXXXXXXXX-----------XXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (6%)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------
disordered (11%)
X------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXX-X---------XXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------X--XXXXX
psipred
--HHHHHHHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------EEEEEE-----HHHHHHHHHHHHHHHHHHHH----EEEEE----------EEEEEE----HHHHHHHH--EEEEE------------EEEEEEEEEEE--------------EEEEEE--------------EEEEEEE-----EEEEE----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------EEEEEEE---EEEEEE---EE--HHHHH---HHHHHHHHHHHHHHHHHHHH---

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    12	    0.108
  max. Y    37	    0.104
  max. S    34	    0.110
  mean S     1-36   0.096
       D     1-36   0.100    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.100 D-cutoff=0.450 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-359     alignment     4v67AX_301     1-362   0.5891   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
813Chlamydia trachomatis3 (0.08%)1E-1211-3591-359442100359ref|YP_001654362.1|peptide chain release factor 1 [Chlamydia trachomatis 434/Bu...
580049Chlamydia trachomatis B/Jali20/OT1 (0.03%)1E-1211-3591-359441100359ref|YP_002887651.1|peptide chain release factor 1 [Chlamydia trachomatis B/Jali...
1100833Chlamydia trachomatis F/SWFPminus1 (0.03%)1E-1211-3591-35944199359ref|YP_005809223.1|peptide chain release factor 1 [Chlamydia trachomatis E/1102...
1112260Chlamydia psittaci 02DC241 (0.03%)1E-1191-3551-35543681355ref|YP_004422488.1|peptide chain release factor 1 [Chlamydia psittaci 6BC] ref|...
1234369Chlamydia pecorum P7871 (0.03%)1E-1171-3591-36042977361ref|YP_004377655.1|peptide chain release factor 1 [Chlamydophila pecorum E58] r...
765952Parachlamydia acanthamoebae UV-71 (0.03%)1E-1161-3541-35342463354ref|YP_004652686.1|peptide chain release factor 1 [Parachlamydia acanthamoebae ...
765953Waddlia chondrophila 2032/991 (0.03%)1E-1141-3511-35041859351ref|YP_003709068.1|Peptide chain release factor 1 [Waddlia chondrophila WSU 86-...
470Acinetobacter baumannii2 (0.05%)1E-10667-3572-29139155291ref|YP_001085183.1|peptide chain release factor 1 [Acinetobacter baumannii ATCC...
45351Nematostella vectensis4 (0.11%)1E-8995-3561-26233654264ref|XP_001634780.1|predicted protein [Nematostella vectensis] gb|EDO42717.1| pr...
281689Desulfuromonas acetoxidans DSM 6841 (0.03%)1E-1321-3593-35847853359ref|WP_005998558.1|peptide chain release factor 1 [Desulfuromonas acetoxidans] ...
555088Dethiobacter alkaliphilus AHT 12 (0.05%)1E-1281-3581-35646453358ref|WP_008516604.1|peptide chain release factor 1 [Dethiobacter alkaliphilus] g...
749219Moraxella catarrhalis RH41 (0.03%)1E-1261-3545-35445653354ref|YP_003626948.1|peptide chain release factor 1 [Moraxella catarrhalis RH4] r...
857575Moraxella catarrhalis BC71 (0.03%)1E-1251-3545-35445553354ref|WP_003669771.1|peptide chain release factor 1 [Moraxella catarrhalis] gb|EG...
1199191Legionella pneumophila subsp. pneumophila str. Thunder Bay1 (0.03%)1E-1251-3565-35845453356ref|YP_096345.1|peptide chain release factor 1 [Legionella pneumophila subsp...
555778Halothiobacillus neapolitanus c22 (0.05%)1E-1251-3466-34945453346ref|YP_003262927.1|peptide chain release factor 1 [Halothiobacillus neapolitanu...
869211Spirochaeta thermophila DSM 65781 (0.03%)1E-1252-3534-35345453352ref|YP_006045949.1|Peptide chain release factor 1 [Spirochaeta thermophila DSM ...
423212Legionella pneumophila 2300/99 Alcoy2 (0.05%)1E-1251-3565-35845353356ref|YP_001251083.1|peptide chain release factor 1 [Legionella pneumophila str. ...
665571Spirochaeta thermophila DSM 61921 (0.03%)1E-1242-3534-35345253352ref|YP_003875136.1|peptide chain release factor 1 [Spirochaeta thermophila DSM ...
525146Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 277742 (0.05%)1E-1241-3581-35545253358ref|YP_002480872.1|peptide chain release factor 1 [Desulfovibrio desulfuricans ...
665942Desulfovibrio sp. 6_1_46AFAA1 (0.03%)1E-1231-3581-35544853358ref|WP_008683134.1|peptide chain release factor 1 [Desulfovibrio] gb|EFL87089.1...






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