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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 .
	MSEKRKSNKIIGIDLGTTNSCVSVMEGGQPKVIASSEGTRTTPSIVAFKGGETLVGIPAKRQAVTNPEKTLASTKRFIGRKFSEVESEIKTVPYKVAPNSKGDAVFDVEQKLYTPEEIGAQILMKMKETAEAYLGETVTEAVITVPAYFNDSQRASTKDAGRIAGLDVKRIIPEPTAAALAYGIDKEGDKKIAVFDLGGGTFDISILEIGDGVFEVLSTNGDTHLGGDDFDGVIINWMLDEFKKQEGIDLSKDNMALQRLKDAAEKAKIELSGVSSTEINQPFITIDANGPKHLALTLTRAQFEHLASSLIERTKQPCAQALKDAKLSASDIDDVLLVGGMSRMPAVQAVVKEIFGKEPNKGVNPDEVVAIGAAIQGGVLGGEVKDVLLLDVIPLSLGIETLGGVMTPLVERNTTIPTQKKQIFSTAADNQPAVTIVVLQGERPMAKDNKEIGRFDLTDIPPAPRGHPQIEVTFDIDANGILHVSAKDAASGREQKIRIEASSGLKEDEIQQMIRDAELHKEEDKQRKEASDVKNEADGMIFRAEKAVKDYHDKIPAELVKEIEEHIEKVRQAIKEDASTTAIKAASDELSTHMQKIGEAMQAQSASAAASSAANAQGGPNINSEDLKKHSFSTRPPAGGSASSTDNIEDADVEIVDKPE
tmhmm (0)	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (3%)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXX-------------------------------------------
coiled-coils (4%)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (16%)	XXXXXX-XXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXX---------XXXXXXXXXXX---------------------XXXXXXXXXXX------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXX
psipred	---------EEEE----HHEEEEEEE--EEEE------------EEEE----EEE-HHHHHHHHH--------HHHH----HHHHHHHHH---EEEEE-----EEEEE---EE-HHHHHHHHHHHHHHHHHHH-------EEEE------HHHHHHHHHHHHH----EEEE--HHHHHHHHH--------EEEEEE-----EEEEEEEE---EEEEEE-----------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH-----EEEE----EE-------EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--EEEEE------HHHHHHHHHHH---------HHHHHHHHHHHHHHHH------EEEEE------EEEE---EEEEEE-----------EEEEE------EEEEEEEE----HH-------EEE-------------EEEEEEE-----EEEEEEE-----EEEEEEE------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------EEE--EEEE----

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    36	    0.152
  max. Y    35	    0.192
  max. S    22	    0.367
  mean S     1-34   0.246
       D     1-34   0.213    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.213 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-660	alignment	3d2eA_308	1-629	0.851100	CHAPERONE

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
759364	Chlamydia trachomatis D-LC	1 (0.03%)	0.0	1-658	4-661	716	100	658	ref|YP_005811449.1|	Chaperone protein [Chlamydia trachomatis D-EC] ref|YP_005812...
813	Chlamydia trachomatis	2 (0.05%)	0.0	1-658	1-658	716	100	658	ref|NP_219906.1|	HSP-70 [Chlamydia trachomatis D/UW-3/CX] ref|YP_005807754.1|...
580047	Chlamydia trachomatis A2497	1 (0.03%)	0.0	1-658	4-661	716	100	658	ref|YP_005813247.1|	Chaperone protein [Chlamydia trachomatis A2497] ref|WP_01454...
1100833	Chlamydia trachomatis F/SWFPminus	1 (0.03%)	0.0	1-658	1-658	715	100	658	ref|YP_328213.1|	molecular chaperone DnaK [Chlamydia trachomatis A/HAR-13] re...
243161	Chlamydia muridarum str. Nigg	1 (0.03%)	0.0	1-658	4-656	695	95	658	ref|NP_297049.1|	dnaK protein [Chlamydia muridarum str. Nigg] ref|WP_01090438...
83560	Chlamydia muridarum	1 (0.03%)	0.0	1-658	1-653	694	95	658	ref|WP_010231193.1|	molecular chaperone DnaK [Chlamydia muridarum] sp|P56836.2|D...
227941	Chlamydophila caviae GPIC	1 (0.03%)	0.0	1-637	1-637	681	90	637	ref|NP_829114.1|	molecular chaperone DnaK [Chlamydophila caviae GPIC] ref|WP_...
264202	Chlamydophila felis Fe/C-56	1 (0.03%)	0.0	1-658	1-661	697	89	661	ref|YP_515682.1|	molecular chaperone DnaK [Chlamydophila felis Fe/C-56] ref|W...
1238237	Chlamydia psittaci 10_1398_11	1 (0.03%)	0.0	1-658	1-658	695	88	658	ref|WP_020370964.1|	chaperone protein DnaK [Chlamydia] gb|EPP35407.1| chaperone ...
1112249	Chlamydia psittaci C6/98	1 (0.03%)	0.0	1-658	1-656	693	88	660	ref|YP_004422094.1|	molecular chaperone protein DnaK [Chlamydia psittaci 6BC] re...
1112253	Chlamydia psittaci 02DC14	1 (0.03%)	0.0	25-658	1-632	647	88	636	ref|YP_006732846.1|	chaperone protein DnaK [Chlamydia psittaci 84/55] ref|YP_006...
1238235	Chlamydia psittaci 10_881_SC42	1 (0.03%)	0.0	1-658	1-655	701	87	661	ref|WP_020355943.1|	chaperone protein DnaK [Chlamydia psittaci] gb|EPP37800.1| c...
1112270	Chlamydia psittaci 09DC79	1 (0.03%)	0.0	1-658	1-656	692	87	660	ref|WP_016966782.1|	chaperone protein DnaK [Chlamydia psittaci] gb|EPJ25182.1| c...
406984	Chlamydophila pneumoniae LPCoLN	1 (0.03%)	0.0	1-660	1-659	690	87	660	ref|YP_005661838.1|	chaperone protein DnaK [Chlamydophila pneumoniae LPCoLN] ref...
1218357	Chlamydia psittaci M56	1 (0.03%)	0.0	1-658	1-656	686	87	660	ref|YP_006737151.1|	chaperone protein DnaK [Chlamydia psittaci M56] ref|WP_01494...
1003238	Chlamydophila abortus LLG	1 (0.03%)	0.0	1-658	1-656	686	87	660	ref|WP_006343899.1|	molecular chaperone DnaK [Chlamydophila abortus] gb|EGK69017...
182082	Chlamydophila pneumoniae TW-183	1 (0.03%)	0.0	1-660	1-659	684	87	660	ref|NP_224699.1|	molecular chaperone DnaK [Chlamydophila pneumoniae CWL029] r...
83555	Chlamydophila abortus	1 (0.03%)	0.0	1-658	1-656	683	87	660	gb|AAN77259.1|AF384685_3	DnaK [Chlamydophila abortus]
218497	Chlamydophila abortus S26/3	1 (0.03%)	0.0	1-658	1-656	670	87	660	ref|YP_219664.1|	molecular chaperone DnaK [Chlamydophila abortus S26/3] ref|W...
331635	Chlamydophila pecorum E58	1 (0.03%)	0.0	4-660	2-660	668	85	660	ref|YP_004377246.1|	chaperone protein DnaK [Chlamydophila pecorum E58] ref|WP_01...