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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660
	MGAVSRDDYIALCTELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPTMYLGDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLGYSPGYSLELKIDGIAVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEAFEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGLITDQKKRSHFENLQLCSQWGFFVAGMPKQCRSRQDVVERIREIEEMRAALPMAIDGVVIKVDNIAYQDRLGLTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQDEIEKKDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPVCHEPVVKEKVSVRCVNPLCSGGMLEKICFFASKSALNIDHLGEKVVTKLFEVGLISSCSDIFALAEEDLKQVPGFKDRSIQNLLASIAGAKKVALDRLLTALSIPFVGSSGAIALADHFGTLDKVIEASLDELMSIEGIGPKVAASIVAFFSKHENREEIRRMQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRCLGGKVSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLRILDAKSVS
tmhmm (0)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (3%)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXX----------------------------------------
coiled-coils (0%)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (4%)	XXXX---X--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXX----------------------------------------------------------------------X--XXXXX
psipred	--HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHHH------EEEEE-----EEEEEEE----EEEEE-----EEEE--HHHHHH--------------EEEEEEEEEEHHHHHHHHHHHHHH--------HHHHHHHHHH--HHHHHH---EEEEEEE--------HHHHHHHHHH--------EEEE--HHHHHHHHHHHHHHHHH-------EEEEE--HHHHHHH----------EEE-------EEEEEEEEEE------EEEEEEE--EEE--EEEEEEE---HHHHHHH------EEEEEE------EEEE------------EE-----------------EEEE-----HHHHHHHHHHHH-----------HHHHHHHHH------HHHHHH--HHHHHH-------HHHHHHHHHHHH----HHHHHH------HHHHHHHHHHHHHHHHHHH----HHHHHH--------HHHHHHHHHHHHHHHHHHHHHH--------------------EEEE-------HHHHHHHHHH---EEE--------EEEE-----HHHHHHHH---EEE-HHHHHHHHHH----
sam	--HHHHHHHHHHHHHHHHH---EEE-------HHHHHHHHHHHHHHHHH-----------------------EEE-------------HHHHHHHHHHHHHHH----EEEEEEEE--EEEEEEEE--EEEEEEE---------------HHHHHHHHH------EEEEEEEEEE-HHHHHHHHHHHHHH--------------------HHHHHH----EEEEE------HHHHHHHHHHHHHH------HHH----HHHHHHHHHHHHHHHHH------EEEEEE-HHHHHHHHHHH----HHHHHH---HHHH-EEEEEEEEEE---------EEEEEEEEEEEEEEEEEE--HHHHHH-------EEEEEE--HHHHHHEEEEE---------EE-----------EEE--EEEEE-----HHHHHHHHHHHHHHH--------HHHHHHHHHH-----HHHHH---HHHHHHHHHH---HHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---EEEEEE--------EEEEEEE------HHHHHHHHHHH---E--EE----EEEEEE-----HHHHHHHH---E--HHHHHHHHHH----
jufo	--HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH------------------------------------HHHHHHHHHHHHH---------EEE----HHHHHEEE--EEEEEEEE-------HHHHHHHHH--------------EEEEEEEEE---HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH-EEEEE----------HHHHHHHHHHH-------EEE---HHHHHHHHHHHHHHHHH---EEEEEEEEE--HHHHHHH----------EE-----HHHHHEEEEEEEE-----EEEEEEEE-------EEEEEEE---HHHHHHH------HHEEEHH---EEEEEEE----------------------------HHEEEE-----HHHHHHHHHHHH---EEEEHHHHHHHHHHHHHH--HH-------HHHHHHH-------HHHHHHHHHHHHHH---HHHHHHH-------HHHHHHHHHHH--HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------EEEEEE----HHHHHHHHHHHHHH--EEE------EEEEEE------HHHHHHHH-EEEEEHHHHHHHHHH----

# SignalP-4.0 gram- predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    28	    0.102
  max. Y     3	    0.112
  max. S    40	    0.136
  mean S     1-2    0.113
       D     1-2    0.112    0.570  NO
Name=tmp_signalp_seq	SP='NO' D=0.112 D-cutoff=0.570 Networks=SignalP-noTM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-579	alignment	1v9pA_202	1-584	0.384800	LIGASE
	580-663	alignment	1l7bA_301	1-92	0.660800	LIGASE

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
813	Chlamydia trachomatis	1 (0.03%)	0.0	1-663	1-663	840	99	663	ref|YP_005807499.1|	NAD-dependent DNA ligase LigA [Chlamydia trachomatis G/9768]...
1100833	Chlamydia trachomatis F/SWFPminus	1 (0.03%)	0.0	1-663	1-663	840	99	663	ref|YP_005809350.1|	NAD-dependent DNA ligase LigA [Chlamydia trachomatis E/11023...
1071753	Chlamydia trachomatis A/363	1 (0.03%)	0.0	1-663	1-663	839	99	663	ref|YP_002888647.1|	NAD-dependent DNA ligase LigA [Chlamydia trachomatis B/TZ1A8...
580049	Chlamydia trachomatis B/Jali20/OT	1 (0.03%)	0.0	1-663	1-663	838	99	663	ref|YP_002887769.1|	NAD-dependent DNA ligase LigA [Chlamydia trachomatis B/Jali2...
1007870	Chlamydia trachomatis RC-L2/55	1 (0.03%)	0.0	1-663	1-663	835	99	663	ref|YP_001654485.1|	NAD-dependent DNA ligase LigA [Chlamydia trachomatis 434/Bu]...
1112249	Chlamydia psittaci C6/98	1 (0.03%)	0.0	5-657	6-659	825	65	655	ref|YP_004422449.1|	NAD-dependent DNA ligase [Chlamydia psittaci 6BC] ref|YP_005...
406984	Chlamydophila pneumoniae LPCoLN	1 (0.03%)	0.0	1-657	1-659	815	59	660	ref|YP_005662186.1|	NAD-dependent DNA ligase [Chlamydophila pneumoniae LPCoLN] r...
340047	Mycoplasma capricolum subsp. capricolum ATCC 27343	1 (0.03%)	4E-7	133-176	1-42	64	52	44	emb|CAA83831.1|	DNA ligase [Mycoplasma capricolum subsp. capricolum ATCC 273...
33940	Geobacillus thermodenitrificans	1 (0.03%)	4E-46	195-313	1-121	193	48	121	gb|AAP49294.1|	NAD-dependent DNA ligase [Geobacillus thermodenitrificans]
235920	Bacillus catenulatus	2 (0.06%)	7E-45	195-313	1-121	189	47	121	gb|AAP79093.1|	NAD-dependent DNA ligase [Bacillus catenulatus]
230325	Bacillus sp. IMG-1	2 (0.06%)	1E-44	195-313	1-121	188	47	121	gb|AAP49290.1|	NAD-dependent DNA ligase [Bacillus sp. IMG-1]
880073	Caldithrix abyssi DSM 13497	1 (0.03%)	0.0	4-659	2-668	942	45	667	ref|WP_006930949.1|	NAD-dependent DNA ligase LigA [Caldithrix abyssi] gb|EHO4334...
716544	Waddlia chondrophila WSU 86-1044	1 (0.03%)	0.0	4-658	1-664	790	45	664	ref|YP_003709591.1|	NAD-dependent DNA ligase LigA [Waddlia chondrophila WSU 86-1...
230326	Bacillus sp. IMG-2	2 (0.06%)	1E-41	195-313	1-121	178	45	121	gb|AAP49292.1|	NAD-dependent DNA ligase [Bacillus sp. IMG-2]
272558	Bacillus halodurans C-125	1 (0.03%)	0.0	4-657	5-667	946	44	665	ref|NP_241515.1|	NAD-dependent DNA ligase LigA [Bacillus halodurans C-125] re...
688269	Thermotoga thermarum DSM 5069	1 (0.03%)	0.0	2-656	5-664	889	44	662	ref|YP_004660088.1|	DNA ligase, NAD-dependent [Thermotoga thermarum DSM 5069] re...
152509	uncultured Bacteroidetes bacterium	1 (0.03%)	0.0	4-663	16-689	887	44	674	dbj|BAL56002.1|	NAD-dependent DNA ligase [uncultured Bacteroidetes bacterium...
159254	Parachlamydia acanthamoebae str. Hall's coccus	1 (0.03%)	0.0	5-658	6-668	818	44	663	ref|WP_006340291.1|	DNA ligase [Parachlamydia acanthamoebae] gb|EFB42439.1| hypo...
1397	Bacillus circulans	2 (0.06%)	1E-44	195-313	1-121	188	44	121	gb|AAP49300.1|	NAD-dependent DNA ligase [Bacillus circulans]
1297581	Anoxybacillus flavithermus AK1	1 (0.03%)	0.0	4-659	5-665	967	43	664	ref|WP_003398639.1|	NAD-dependent DNA ligase LigA [Anoxybacillus flavithermus] g...