old.robetta.org

Click the icons below each image to download the prediction in PDB format ( )

Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580
	MRMSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTPLFQRVILKMTEIIREELNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRENKAMCLAPTHEEVVSEFVAQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLMEDSYTFSDSPEQMEEQYAKLRLAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSLGEDTICVSGSYGANVEAAQAIPPSYVYDSNLLPVEEVATPNIRTIEDLEVFFNTPKHKILKTLVVKTCQKDSEKFFAICIRGDRQINLTKVASFLQVDDCELASEEEILKHLHVEKGFIGPLYCPIPCYADETTRPMTNFICANNQKDVHCKHVNWGRDIPLPAFGDFLLAEAGDLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFSVGFQDKNGDKQLCWMGTYGIGVGRTLAACIEQLADNKGLVWPLAVAPFSITILYNGGDTEGEATALQLYQSLNTEGFEPLLDDRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIESRSGEKCNVSPENLLDWCSKNLPCHTRKIPPLREQN
tmhmm (0)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (5%)	X---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXX
psipred	--------------HHH--HHHHHHHHH----EE-----EEE-HHHHHHHHHHHHHHHHHHHH---EEEE------HHHHHH-----------EEEEEE-----EE------HHHHHHHHHHH---HHH--HHHHH--EEE----------HHHEHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH----EEEEE----------HHHHHH-----HHH-----------------------------EEE-------HHHHHHH----HHHHEEEEEE---------EEEEE----HHHHHHHHH------------HHHHHHHH--------------EEEEE------------------EEE-------------HHHHH-------------EEEEE--HHHHHHH---HHHHHH---EEE-----EEEEEEEEEEEHHHHHHHHHHHHH------EE------EEEEEEE---HHHHHHHHHHHHHHHHH---EEEEE-----HHHHHHHHHH----EEEEE---HHH--EEEEEEE---EEEEEHHHHHHHHHHHHHHHHHHHHHHHH--

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    42	    0.111
  max. Y     1	    0.212
  max. S     1	    0.458
  mean S     1-0    0.000
       D     1-0    0.129    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.129 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-581	alignment	5e6mA_305	1-519	0.9525	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
1007870	Chlamydia trachomatis RC-L2/55	2 (0.05%)	0.0	1-581	1-581	700	100	581	ref|YP_001654722.1|	prolyl-tRNA synthetase [Chlamydia trachomatis 434/Bu] ref|YP...
813	Chlamydia trachomatis	2 (0.05%)	0.0	1-581	1-581	700	100	581	ref|NP_219903.1|	Prolyl tRNA Synthetase [Chlamydia trachomatis D/UW-3/CX] ref...
718219	Chlamydia trachomatis G/9301	1 (0.03%)	0.0	1-581	1-581	700	100	581	ref|YP_005807751.1|	prolyl-tRNA synthetase [Chlamydia trachomatis G/9768] ref|YP...
707186	Chlamydia trachomatis G/11222	1 (0.03%)	0.0	1-581	1-581	695	100	581	ref|YP_005808673.1|	prolyl-tRNA synthetase [Chlamydia trachomatis G/11222] ref|W...
1071758	Chlamydia trachomatis D/SotonD6	1 (0.03%)	0.0	1-581	1-581	699	99	581	ref|YP_007733918.1|	prolyl-tRNA synthetase [Chlamydia trachomatis D/SotonD6] ref...
1100833	Chlamydia trachomatis F/SWFPminus	1 (0.03%)	0.0	1-581	1-581	698	99	581	ref|YP_005809604.1|	prolyl-tRNA synthetase [Chlamydia trachomatis E/11023] ref|Y...
580047	Chlamydia trachomatis A2497	1 (0.03%)	0.0	1-581	17-597	698	99	581	ref|YP_005813244.1|	prolyl-tRNA synthetase [Chlamydia trachomatis A2497] ref|WP_...
1071753	Chlamydia trachomatis A/363	1 (0.03%)	0.0	1-581	1-581	696	99	581	ref|YP_002888012.1|	prolyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT] r...
315277	Chlamydia trachomatis A/HAR-13	1 (0.03%)	0.0	1-581	1-581	695	99	581	ref|YP_328210.1|	prolyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13] ref|...
1003238	Chlamydophila abortus LLG	1 (0.03%)	0.0	1-569	1-569	672	74	569	ref|WP_006343902.1|	prolyl-tRNA synthetase [Chlamydophila abortus] gb|EGK69020.1...
1112249	Chlamydia psittaci C6/98	1 (0.03%)	0.0	1-569	1-569	672	74	569	ref|YP_004422097.1|	prolyl-tRNA synthetase [Chlamydia psittaci 6BC] ref|YP_00566...
406984	Chlamydophila pneumoniae LPCoLN	1 (0.03%)	0.0	1-568	1-568	676	71	568	ref|YP_005661841.1|	prolyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN] ref...
1234368	Chlamydia pecorum W73	1 (0.03%)	0.0	1-577	1-575	645	68	577	ref|YP_004377249.1|	prolyl-tRNA synthetase [Chlamydophila pecorum E58] ref|YP_00...
1048260	Leptospirillum ferriphilum ML-04	1 (0.03%)	1E-85	1-249	1-249	324	47	251	ref|YP_006767292.1|	prolyl-tRNA synthetase [Leptospirillum ferriphilum ML-04] re...
419541	Leptospirillum sp. Group II '5-way CG'	1 (0.03%)	4E-85	1-250	1-250	322	46	252	gb|EDZ40285.1|	Prolyl-tRNA synthetase [Leptospirillum sp. Group II '5-way C...
412449	Leptospirillum ferrodiazotrophum	1 (0.03%)	2E-87	1-250	1-250	330	45	252	gb|EES52662.1|	prolyl-tRNA synthetase [Leptospirillum ferrodiazotrophum]
432331	Sulfurihydrogenibium yellowstonense SS-5	1 (0.03%)	9E-61	1-164	1-162	241	45	164	ref|WP_007547579.1|	prolyl-tRNA synthetase, partial [Sulfurihydrogenibium yellow...
997329	Salmonella enterica subsp. enterica serovar Enteritidis str. 33944	1 (0.03%)	1E-111	1-279	1-279	407	43	281	ref|WP_001726708.1|	prolyl-tRNA ligase [Salmonella enterica] gb|ELO76941.1| prol...
383631	Methylophilales bacterium HTCC2181	3 (0.07%)	5E-91	1-241	1-241	342	43	243	ref|WP_008108004.1|	prolyl-tRNA synthetase [Methylophilales bacterium HTCC2181] ...
667014	Thermodesulfatator indicus DSM 15286	1 (0.03%)	0.0	1-569	1-567	757	42	574	ref|YP_004625604.1|	prolyl-tRNA synthetase [Thermodesulfatator indicus DSM 15286...