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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630
	MIHVTCNQEAFELPEGASAMDLANKMKQSHCFAGALINDQEKDLSTTLQDGDTVLFLTWDDPKGREIFLHTSAHILAQAVLRLWPSAQPTIGPVIDQGFYYDFANLSISEEDFPAIEAMAKTIAEEKFPISRQVFPDKEAALAYFSQNPFKAELIAELPEEVEISAYTQGEFLDLCRGPHLPSTAPVKAFKLLRTSSAYWKGDPSRESLIRIYGVSFPTTKELKEHLHQLEEAKKRDHRVLGTKLDLFSQQTCSAGMPFFHPRGMVVWNALVDYWKRLHQRAGYQQIQTPQLMNRELWEISGHWENYKENMYTLTVDEEDYAIKPMNCPGCMLYYKTQLHSYREFPLRIAEIGHVHRHELSGALSGLMRVRTFHQDDAHVFLTPEQVEEETLNILNLVSELYGTFGLEYHLELSTRPEQGTIGSDDLWELATKALKRALVKSQKPFIISPGEGAFYGPKIDIHVKDAINRTWQCGTIQLDMFLPERFDLKYTNAQGEKSTPIMLHRALFGSIERFLGILIEHFKGRFPLWLSPEHVRIITVADRHEARAQELAKHFSQMGIIVSVDSSNESVSKKIRNAQNMQVNYMITIGDKELETHLLAVRTRDNRVLNDIAVEQFSHVILEELRSLSLTPSL
tmhmm (0)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (2%)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (3%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXX----------------X--XXXXX
psipred	-EEEEE--EEEEE-----HHHHHHH------EEEEEE--EEEE---------EEEEE-------HHHHHHHHHHHHHHHHHHH----EEEE------EEEEEE------HHHHHHHHHHHHHHHH----EEEEEE-HHHHHHHHHH--HHHHHHHHH------EEEEE---EEEEE--------HH---HHHH----------------------------HHHHH---HHH---HHHHHHHHH-EEEEE------EEEE-HHHHHHHHHHHHHHHHHHHH---EEE-------HHHHHH-HHHHH------EEEE--HH--------HHHHHHHH-----HHH--HHHHH---------------------EEE--------HHHHHHHHHHHHHHHHHHHHHH---EEEE------------HHHHHHHHHHHHHHHHH----HH-----------------------------EE-----HHH---EEE--------EEEEEEE----HHHHHHHHHHHH----------EEEEEE---HHHHHHHHHHHHHHHH---EEEEE-----HHHHHHHHHH----EEEEE-HHHHH--EEEEEE------EEEEHHHHHHHHHHHHH--------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    20	    0.266
  max. Y    20	    0.179
  max. S    17	    0.193
  mean S     1-19   0.115
       D     1-19   0.154    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.154 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-635	alignment	1qf6A_201	1-641	0.9846	LIGASE/RNA

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
1007870	Chlamydia trachomatis RC-L2/55	1 (0.03%)	0.0	1-635	1-635	711	100	635	ref|YP_001654914.1|	threonyl-tRNA synthetase [Chlamydia trachomatis 434/Bu] ref|...
1100833	Chlamydia trachomatis F/SWFPminus	1 (0.03%)	0.0	1-635	1-635	709	100	635	ref|YP_005809804.1|	threonyl-tRNA synthetase [Chlamydia trachomatis E/11023] ref...
1112249	Chlamydia psittaci C6/98	1 (0.03%)	0.0	1-635	1-635	695	79	635	ref|YP_004422774.1|	threonyl-tRNA synthetase [Chlamydia psittaci 6BC] ref|YP_005...
406984	Chlamydophila pneumoniae LPCoLN	1 (0.03%)	0.0	1-635	1-635	680	76	635	ref|YP_005662624.1|	threonyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN] r...
765953	Waddlia chondrophila 2032/99	1 (0.03%)	0.0	2-635	1-637	702	58	637	ref|YP_003708408.1|	Threonyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044] ...
765952	Parachlamydia acanthamoebae UV-7	1 (0.03%)	0.0	10-631	12-635	665	57	625	ref|YP_004653556.1|	threonyl-tRNA synthetase [Parachlamydia acanthamoebae UV-7] ...
401526	Thermosinus carboxydivorans Nor1	5 (0.12%)	1E-169	120-629	1-510	600	53	511	ref|WP_007290282.1|	threonyl-tRNA synthetase [Thermosinus carboxydivorans] gb|EA...
429009	Ammonifex degensii KC4	1 (0.03%)	0.0	1-632	1-637	744	52	638	ref|YP_003239612.1|	threonyl-tRNA synthetase [Ammonifex degensii KC4] ref|WP_015...
583358	Thermoanaerobacter mathranii subsp. mathranii str. A3	1 (0.03%)	0.0	1-631	1-634	781	51	636	ref|YP_003677251.1|	threonyl-tRNA synthetase [Thermoanaerobacter mathranii subsp...
509193	Thermoanaerobacter brockii subsp. finnii Ako-1	1 (0.03%)	0.0	1-631	1-634	779	51	636	ref|YP_001664759.1|	threonyl-tRNA synthetase [Thermoanaerobacter pseudethanolicu...
580331	Thermoanaerobacter italicus Ab9	1 (0.03%)	0.0	1-631	1-635	777	51	637	ref|YP_003477342.1|	threonyl-tRNA synthetase [Thermoanaerobacter italicus Ab9] r...
246194	Carboxydothermus hydrogenoformans Z-2901	1 (0.03%)	0.0	1-630	1-634	769	51	635	ref|YP_360408.1|	threonyl-tRNA synthetase [Carboxydothermus hydrogenoformans ...
1198630	Thermoanaerobacter thermohydrosulfuricus WC1	1 (0.03%)	0.0	1-631	1-634	767	51	636	ref|WP_003871461.1|	threonyl-tRNA synthetase [Thermoanaerobacter] gb|EGD50470.1|...
697303	Thermoanaerobacter wiegelii Rt8.B1	1 (0.03%)	0.0	1-631	1-634	766	51	636	ref|YP_004820343.1|	threonyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1...
573062	Thermoanaerobacter sp. X513	3 (0.07%)	0.0	1-631	1-634	765	51	636	ref|YP_001663665.1|	threonyl-tRNA synthetase [Thermoanaerobacter sp. X514] ref|Y...
589861	Thermoanaerobacter ethanolicus CCSD1	1 (0.03%)	0.0	1-631	1-634	763	51	636	ref|WP_003867235.1|	threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus] gb...
439235	Desulfatibacillum alkenivorans AK-01	2 (0.05%)	0.0	1-635	1-633	721	51	638	ref|YP_002433364.1|	threonyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-...
177437	Desulfobacterium autotrophicum HRM2	1 (0.03%)	0.0	1-635	1-635	708	51	641	ref|YP_002604988.1|	threonyl-tRNA synthetase [Desulfobacterium autotrophicum HRM...
879212	Desulfobacter postgatei 2ac9	1 (0.03%)	0.0	1-632	1-633	706	51	635	ref|WP_004075729.1|	threonyl-tRNA synthetase [Desulfobacter postgatei] gb|EIM655...
411467	Pseudoflavonifractor capillosus ATCC 29799	2 (0.05%)	0.0	57-632	8-586	670	51	580	ref|WP_006570834.1|	threonyl-tRNA synthetase [Pseudoflavonifractor capillosus] g...