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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330
	MLEIPAPTAVFSFVIDEQLTGRLDKGLVSYNGAYSRAFYQQQIELGRVRVNGRVYTRVSHPLSLGDVVEVELIEEEEPSSLIPEDIPLDKVYEDDMMLVINKPRDMVVHPAPGHTQGTVVHALLHEIGERLKQEFPEEPWRPGIVHRLDKDTSGLLITVKTRRAKALYSELFATKQVKKLYVAICINAPSQERIHTRIARHPLKRKEMTVLSTHAEGGKEAITHCQVLATNGRLSVVALYPETGRTHQLRVHMKHLGTPILGDPVYGIPSINFRYGLDKQQLHAYSLVFAHPESAERVKLVTKLPDDMTSLIEKEFREGVSILDGSCDWFKITR
tmhmm (0)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (7%)	-----------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (2%)	XXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
psipred	--------EEEEEEE-------HHHHHHHH-----HHHHHHHHH---EEE--EEE-----------EEEEE------------------EEEE---EEEEE-----EE----------HHHHHHHHHHHHHHHH------EEEEE--------EEEEEE--HHHHHHHHHHHHH----EEEEEEEEE-----EEEEEEEE-------EEEEE------EEEEEEEEEEEEE--EEEEEEE-----HHHHHHHHHH-----------------------HHHHH--EEEEE------EEEEEE--HHHHHHHHHHHHH-----------HHHH--

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    63	    0.110
  max. Y     2	    0.141
  max. S     1	    0.196
  mean S     1-1    0.196
       D     1-1    0.171    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.171 D-cutoff=0.450 Networks=SignalP-noTM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-334	alignment	4lgtD_310	1-247	0.6672	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
1100833	Chlamydia trachomatis F/SWFPminus	1 (0.03%)	1E-104	1-334	2-335	384	100	334	ref|YP_005809887.1|	ribosomal large subunit pseudouridine synthase D [Chlamydia ...
596777	Chlamydia trachomatis E/Bour	1 (0.03%)	1E-104	1-334	1-334	384	100	334	ref|NP_220177.1|	Pseudouridine Synthase [Chlamydia trachomatis D/UW-3/CX] ref...
813	Chlamydia trachomatis	2 (0.05%)	1E-104	1-334	1-334	383	99	334	ref|YP_008921532.1|	ribosomal large subunit pseudouridine synthase D [Chlamydia ...
1007871	Chlamydia trachomatis RC-J/971	1 (0.03%)	1E-102	1-334	2-335	379	99	334	ref|YP_008346576.1|	ribosomal large subunit pseudouridine synthase D [Chlamydia ...
1007870	Chlamydia trachomatis RC-L2/55	2 (0.05%)	1E-102	1-334	2-335	378	99	334	ref|YP_001654118.1|	ribosomal large subunit pseudouridine synthase D [Chlamydia ...
580049	Chlamydia trachomatis B/Jali20/OT	1 (0.03%)	1E-102	1-334	2-335	378	99	334	ref|YP_002888282.1|	ribosomal large subunit pseudouridine synthase D [Chlamydia ...
83560	Chlamydia muridarum	2 (0.05%)	5E-97	1-334	1-338	360	83	338	ref|WP_010229167.1|	ribosomal large subunit pseudouridine synthase D [Chlamydia ...
1112249	Chlamydia psittaci C6/98	1 (0.03%)	8E-85	11-327	7-319	320	66	317	ref|YP_004421883.1|	ribosomal large subunit pseudouridine synthase D [Chlamydia ...
1234367	Chlamydia pecorum PV3056/3	1 (0.03%)	1E-87	8-329	10-327	329	62	322	ref|YP_004377033.1|	RluA family pseudouridine synthase [Chlamydophila pecorum E5...
159254	Parachlamydia acanthamoebae str. Hall's coccus	1 (0.03%)	6E-89	12-314	11-308	334	44	305	ref|WP_006342336.1|	23S RNA pseudouridylate synthase [Parachlamydia acanthamoeba...
765952	Parachlamydia acanthamoebae UV-7	1 (0.03%)	5E-89	12-314	11-308	334	44	305	ref|YP_004651521.1|	RNA pseudouridine synthase Cpar_0723 [Parachlamydia acantham...
498848	Thermus aquaticus Y51MC23	1 (0.03%)	2E-79	19-315	7-291	302	42	297	ref|WP_003045065.1|	ribosomal large subunit pseudouridine synthase D [Thermus aq...
1218173	Bacillus alcalophilus ATCC 27647	1 (0.03%)	2E-99	9-316	2-301	368	41	311	ref|WP_003320603.1|	RNA pseudouridine synthase [Bacillus alcalophilus] gb|EJT005...
495036	Geobacillus sp. G11MC16	3 (0.07%)	4E-99	10-319	3-304	368	41	313	ref|YP_001125126.1|	ribosomal large subunit pseudouridine synthase D-like protei...
471223	Geobacillus sp. WCH70	3 (0.07%)	1E-96	10-317	3-302	359	41	311	ref|YP_002949167.1|	pseudouridine synthase [Geobacillus sp. WCH70] ref|WP_015863...
517722	Citromicrobium sp. JLT1363	1 (0.03%)	8E-92	19-317	111-412	343	41	306	ref|WP_010414976.1|	ribosomal large subunit pseudouridine synthase D [Citromicro...
91464	Synechococcus sp. PCC 7335	1 (0.03%)	1E-90	11-318	3-307	339	41	310	ref|WP_006455868.1|	RNA pseudouridine synthase [Synechococcus sp. PCC 7335] gb|E...
523794	Leptotrichia buccalis C-1013-b	1 (0.03%)	2E-90	13-314	27-318	338	41	304	ref|YP_003164277.1|	pseudouridine synthase [Leptotrichia buccalis C-1013-b] ref|...
411462	Dorea longicatena DSM 13814	3 (0.07%)	2E-87	43-316	1-268	328	41	276	ref|WP_006426559.1|	RNA pseudouridine synthase [Dorea longicatena] gb|EDM63859.1...
849	Fusobacterium gonidiaformans	1 (0.03%)	9E-85	14-317	12-309	320	41	308	ref|WP_008801534.1|	pseudouridine synthase [Fusobacterium gonidiaformans] gb|EFS...