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Job 82032 [SSGCID - ChtrB.00164.a] [2018-03-09] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Arginine--tRNA ligase (EC 6.1.1.19) (Arginyl-tRNA synthetase) (ArgRS) - BATCH:82003

Full Structure Predictions  
Model 1

chemical/x-pdb MIME type  PDB file 		Model 2

chemical/x-pdb MIME type  PDB file 		Model 3

chemical/x-pdb MIME type  PDB file 		Model 4

chemical/x-pdb MIME type  PDB file 		Model 5

chemical/x-pdb MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

Images were produced using MolScript and Raster3D!




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Features and Secondary Structure  
  
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mttllsfltslcsaaihqaFPELEELTLDITPSTKEHFGHYQCNDAMKLARVLHKSPRAIAESIVAHIPPTPFSSIEIAGAGFINFTFSKEFLASQLQTFSKELANGFRAASPQKVIIDFSSPNIAKDMHVGHLRSTIIGDCLARCFSFVGHDVLRLNHIGDWGTAFGMLITYLQETSQEAIHQLEDLTALYKKAHARFAEDSEFKKRSQHNVVALQSGDAQALALWKQICSVSEKSFQTIYSILDVELHTRGESFYNPFLAEVVADLESKNLVTLSDGAKCVFHEAFSIPLMIQKSDGGYNYATTDVAAMRYRIQQDQADRILIVTDSGQSLHFQLLEATCLAAGYLPSKGIFSHVGFGLVLDTQGRKFKTRSGENIKLRELLDTAVEKAKESLKAHRPDISEEELAYQGPILGINAIKYADLSSHRINDYVFSFEKMLRFEGNTAMSLLYAYVRIQGIKRRMGLESPPQEGPLAVHEPAEEALALTLLRFPEILDLTLRELCPHFLTDYLYALTNKFNAFFRDCHIEGSDSQQERLYLCGLTERTLSTGMHLLGLKTLNHL
tmhmm (0) 
                   ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (2%) 
                   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXX-------------------------------------------------------------------------
coiled-coils (0%) 
                   ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (2%) 
                   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------X
psipred 
                   --------EEEE-----------HHHHHHHHHH----HHHHHHHHHHHH----EEEEEE----EEEEEE-HHHHHHHHHHHHH------------EEEEEEE-----------HHHHHHHHHHHHHHHHHHH---EEEEEE--HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHEEE--HHHHHHHHHHHHHHHHHHH---EE-----EEEEE-----EEEEEE----EEEHHHHHHHHHHHHH-----EEEEE----HHHHHHHHHHHHHHH----HHH-EEEEEEEEEE-------------EEEHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH-HHHHHHHHHHH---------HHHHH------HHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----------

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    20	    0.266
  max. Y    20	    0.424
  max. S    13	    0.828
  mean S     1-19   0.662
       D     1-19   0.552    0.450  YES
Name=tmp_signalp_seq	SP='YES' Cleavage site between pos. 19 and 20: HQA-FP D=0.552 D-cutoff=0.450 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-544     alignment     4q2tA_201     1-591   0.9373   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
813Chlamydia trachomatis3 (0.08%)0.01-54320-562668100543ref|YP_007735769.1|arginyl-tRNA synthetase [Chlamydia trachomatis Ia/SotonIa1] ...
718219Chlamydia trachomatis G/93011 (0.03%)0.01-54320-562666100543ref|YP_005807819.1|arginyl-tRNA synthetase [Chlamydia trachomatis G/9768] ref|Y...
1007870Chlamydia trachomatis RC-L2/551 (0.03%)0.01-54320-56266999543ref|YP_001654786.1|arginyl-tRNA synthetase [Chlamydia trachomatis 434/Bu] ref|Y...
1100832Chlamydia trachomatis E/C5991 (0.03%)0.01-54320-56266799543ref|YP_005809672.1|arginyl-tRNA synthetase [Chlamydia trachomatis E/11023] ref|...
1100833Chlamydia trachomatis F/SWFPminus1 (0.03%)0.01-54320-56266799543ref|YP_008655623.1|arginyl-tRNA synthetase [Chlamydia trachomatis F/SWFPminus] ...
1071753Chlamydia trachomatis A/3631 (0.03%)0.01-54320-56266699543ref|YP_328276.1|arginyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13] ref...
1071754Chlamydia trachomatis A/52911 (0.03%)0.01-54320-56266499543ref|YP_005156289.1|arginyl-tRNA synthetase [Chlamydia trachomatis A2497] ref|YP...
580049Chlamydia trachomatis B/Jali20/OT1 (0.03%)0.01-54320-56266099543ref|YP_002888076.1|arginyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT] ...
243161Chlamydia muridarum str. Nigg1 (0.03%)0.01-54320-56266291543ref|NP_297113.1|arginyl-tRNA synthetase [Chlamydia muridarum str. Nigg] ref|...
227941Chlamydophila caviae GPIC1 (0.03%)0.01-54321-56364176543ref|NP_829045.1|arginyl-tRNA synthetase [Chlamydophila caviae GPIC] ref|WP_0...
1112249Chlamydia psittaci C6/981 (0.03%)0.01-54319-56164875543ref|YP_004422028.1|arginyl-tRNA synthetase [Chlamydia psittaci 6BC] ref|YP_0056...
1218357Chlamydia psittaci M561 (0.03%)0.01-54319-56164675543ref|YP_006737077.1|arginyl-tRNA synthetase [Chlamydia psittaci M56] ref|WP_0149...
1003238Chlamydophila abortus LLG1 (0.03%)0.01-54319-56164275543ref|WP_006343835.1|arginyl-tRNA synthetase [Chlamydophila abortus] gb|EGK68948....
218497Chlamydophila abortus S26/31 (0.03%)0.01-54319-56164175543ref|YP_219598.1|arginyl-tRNA synthetase [Chlamydophila abortus S26/3] ref|WP...
264202Chlamydophila felis Fe/C-561 (0.03%)1E-1781-54319-56163175543ref|YP_515752.1|arginyl-tRNA synthetase [Chlamydophila felis Fe/C-56] ref|WP...
1238237Chlamydia psittaci 10_1398_111 (0.03%)1E-1781-53320-55263172533ref|WP_020370892.1|arginine--tRNA ligase [Chlamydia] gb|EPP35346.1| arginine--t...
406984Chlamydophila pneumoniae LPCoLN1 (0.03%)1E-1771-54320-56062872543ref|YP_005661770.1|arginyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN] re...
182082Chlamydophila pneumoniae TW-1831 (0.03%)1E-1741-54320-56061972543ref|NP_224766.1|arginyl-tRNA synthetase [Chlamydophila pneumoniae CWL029] re...
1234369Chlamydia pecorum P7871 (0.03%)1E-1721-54120-56161071543ref|YP_004377176.1|arginyl-tRNA synthetase [Chlamydophila pecorum E58] ref|YP_0...
331113Simkania negevensis Z1 (0.03%)1E-1781-54420-58463251565ref|YP_004672571.1|arginyl-tRNA synthetase [Simkania negevensis Z] ref|WP_01394...



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