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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 .
	MSSELIVHTGDAAFEQDVLKSDLPVLLDFWAPWCSPCKMIAPILDDIAAEFEGRLKVVKINIDDNEATPSRFGVRGIPTLMVFKNGEVVATKVGALAKGQLTAFVEASIA
tmhmm (0)	--------------------------------------------------------------------------------------------------------------
low complexity (0%)	--------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	--------------------------------------------------------------------------------------------------------------
disordered (4%)	XXXX----------------------------------------------------------------------------------------------------------
psipred	-----EEE--HHHHHHHHH----EEEEEEE----HHHHHHHHHHHHHHHHH---EEEEEEE----HHHHHH-------EEEEEE--EEEEEE-----HHHHHHHHHHH--

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    50	    0.119
  max. Y    50	    0.114
  max. S    36	    0.137
  mean S     1-49   0.106
       D     1-49   0.110    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.110 D-cutoff=0.450 Networks=SignalP-noTM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-110	alignment	3dyrA_203	1-111	0.9583	Electron transport

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
528354	Neisseria gonorrhoeae MS11	1 (0.03%)	2E-41	1-110	1-110	173	100	110	ref|YP_008502364.1|	thioredoxin [Neisseria gonorrhoeae MS11] ref|WP_003695407.1|...
940296	Neisseria gonorrhoeae TCDC-NG08107	1 (0.03%)	3E-43	1-110	20-129	180	99	110	ref|YP_002001883.1|	putative thioredoxin I [Neisseria gonorrhoeae NCCP11945] ref...
1145162	Neisseria meningitidis M13265	1 (0.03%)	3E-42	1-110	1-110	176	99	110	ref|YP_207791.1|	thioredoxin I [Neisseria gonorrhoeae FA 1090] ref|YP_0040487...
1145178	Neisseria meningitidis 98002	1 (0.03%)	4E-42	1-110	1-110	176	98	110	ref|WP_002216999.1|	thioredoxin [Neisseria meningitidis] gb|EGC51326.1| thioredo...
869214	Neisseria lactamica Y92-1009	1 (0.03%)	5E-42	1-110	1-110	176	98	110	ref|WP_003713684.1|	thioredoxin [Neisseria lactamica] emb|CBX22560.1| unnamed pr...
1145144	Neisseria meningitidis NM607	1 (0.03%)	1E-41	1-110	1-110	175	98	110	ref|YP_001599406.1|	thioredoxin I [Neisseria meningitidis 053442] ref|YP_0023428...
1069609	Neisseria meningitidis 93004	1 (0.03%)	3E-42	1-110	1-110	176	97	110	ref|WP_002233994.1|	thioredoxin [Neisseria meningitidis] gb|EJU54286.1| thioredo...
1145131	Neisseria meningitidis 70082	1 (0.03%)	2E-41	1-110	1-110	173	97	110	ref|WP_002237084.1|	thioredoxin [Neisseria meningitidis] gb|EJU64757.1| thioredo...
663926	Neisseria meningitidis alpha153	1 (0.03%)	1E-34	19-110	1-92	151	96	92	emb|CBA09556.1|	thioredoxin [Neisseria meningitidis alpha153]
935589	Neisseria meningitidis NZ-05/33	1 (0.03%)	8E-44	1-110	20-129	182	95	110	ref|YP_005903947.1|	thioredoxin [Neisseria meningitidis NZ-05/33] ref|WP_0145824...
935595	Neisseria meningitidis M01-240013	1 (0.03%)	5E-43	1-110	20-129	179	95	110	ref|WP_002227238.1|	thioredoxin [Neisseria meningitidis] gb|EGC66798.1| thioredo...
1190581	Neisseria meningitidis NM2866	1 (0.03%)	8E-43	1-110	1-110	178	95	110	ref|YP_005882934.1|	thioredoxin I [Neisseria meningitidis alpha710] ref|YP_00589...
1190579	Neisseria meningitidis NM3173	1 (0.03%)	5E-42	1-110	1-110	175	95	110	ref|NP_274384.1|	thioredoxin I [Neisseria meningitidis MC58] ref|YP_975317.1|...
1069618	Neisseria meningitidis 92045	1 (0.03%)	1E-41	1-110	1-110	175	94	110	ref|WP_002239870.1|	thioredoxin [Neisseria meningitidis] gb|EJU71202.1| thioredo...
662598	Neisseria meningitidis alpha14	1 (0.03%)	7E-42	1-110	1-110	175	94	110	ref|YP_003083380.1|	thioredoxin [Neisseria meningitidis alpha14] ref|WP_01581567...
546262	Neisseria cinerea ATCC 14685	1 (0.03%)	8E-42	1-110	1-110	175	94	110	ref|WP_003674588.1|	thioredoxin [Neisseria cinerea] gb|EEZ72649.1| thioredoxin [...
1145181	Neisseria meningitidis 2003051	1 (0.03%)	1E-41	1-110	1-110	174	94	110	ref|WP_002259689.1|	thioredoxin [Neisseria meningitidis] gb|EOC53712.1| thioredo...
1095667	Neisseria meningitidis 77221	1 (0.03%)	2E-41	1-110	1-110	174	94	110	ref|WP_002242708.1|	thioredoxin [Neisseria meningitidis] gb|EJU79144.1| thioredo...
546266	Neisseria mucosa ATCC 25996	1 (0.03%)	5E-43	1-110	1-110	179	91	110	ref|WP_003740709.1|	thioredoxin [Neisseria mucosa] gb|EFC89760.1| thioredoxin [N...
490	Neisseria sicca	2 (0.05%)	1E-43	1-110	1-110	181	90	110	ref|WP_016687008.1|	thioredoxin [Neisseria sicca]