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Job 85031 [SSGCID - NegoA.00156.a] [2018-08-01] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] threonyl-tRNA synthetase - BATCH:85027

Full Structure Predictions  
Model 1

chemical/x-pdb MIME type  PDB file 		Model 2

chemical/x-pdb MIME type  PDB file 		Model 3

chemical/x-pdb MIME type  PDB file 		Model 4

chemical/x-pdb MIME type  PDB file 		Model 5

chemical/x-pdb MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

Images were produced using MolScript and Raster3D!




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Features and Secondary Structure  
  
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MLNITLPDCSVRQYESPVTVAQIAASIGAGLAKAAVAGKVNGKLVDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVIEEGFYYDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQERGEEYKLRLIEDMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTKLAGAYWRGDSNNEMLQRIYGTAWATKDELKDYIQRIEEAEKRDHRKLGKQLDLFHLQDEAPGMVFWHPKGWALWQTIEQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWDNYKDNMFVTSSEKREYAVKPMNCPGHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQIVSEARAFNELLVRIYKQFGFHDVSVRLSLRPEKRAGSDDVWDKAEQGLREALTACGVEWGELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPERLDAEYVTENNDRARPVMLHRAILGSLERFVGILIENHAGSFPLWLAPVQMVIMNITENQADYCREVAAKLQAAGFRAELDLRNEKIGYKIRDNSQYRFPYQIVIGDKEKQENKVAVRRKAEDLGSLDLDDFIAQLQQEITDALVNH
tmhmm (0) 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (4%) 
----------------------XXXXXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (3%) 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (1%) 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXX
psipred 
--EEE-----EEEE-----HHHHHHHH-------EEEEEE--EEEE---------EEEEE-------HHHHHHHHHHHHHHHHHHH---EEEEEE-----EEEEE--------HHHHHHHHHHHHHHHH----EEEEEE-HHHHHHHHHH---HHHHHHHHH-----EEEEEEE--EEEE----------HHEHHHH------EEE------------------HHHHHHHHHH-----HHHHHHHHHHH-EEEE------EEEE---HHHHHHHHHHHHHHHHHH--EEEEE------HHHHHH---HHHH------EE-----EE------HHHHHHH------HHH-HHHHHH--EEE------------EEEEEEHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH---EEEEE-----EEE--------------------HHH------HHHH--HHH--------------EEEEE-----HHHHHHHHHHH-----------EEEEEE---HHHHHHHHHHHHHHHH---EEEEE-----HHHHHHHHHH----EEEEE-HHHHH--EEEEEE----EEEEEHHHHHHHHHHHHHHHHH--

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    35	    0.382
  max. Y    35	    0.369
  max. S    34	    0.525
  mean S     1-34   0.254
       D     1-34   0.324    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.324 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-637     alignment     1qf6A_201     1-641   0.9961   LIGASE/RNA


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
242231Neisseria gonorrhoeae FA 10901 (0.03%)0.01-6371-637833100637ref|YP_207455.1|threonyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090] ref...
528348Neisseria gonorrhoeae DGI21 (0.03%)0.01-63712-648833100637ref|WP_003704417.1|threonyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EFE03261...
528351Neisseria gonorrhoeae F621 (0.03%)0.01-63712-648833100637ref|WP_003706647.1|threonyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EFF39248...
528358Neisseria gonorrhoeae PID3321 (0.03%)0.01-6371-637833100637ref|WP_003699550.1|threonyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EEZ54289...
521006Neisseria gonorrhoeae NCCP119451 (0.03%)0.01-63712-648833100637ref|YP_002001068.1|threonyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945] r...
940296Neisseria gonorrhoeae TCDC-NG081071 (0.03%)0.01-63712-648833100637ref|YP_005889166.1|threonyl-tRNA synthetase [Neisseria gonorrhoeae TCDC-NG08107...
528356Neisseria gonorrhoeae PID181 (0.03%)0.01-6371-637832100637ref|WP_003696804.1|threonyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EEZ49626...
528359Neisseria gonorrhoeae SK-92-6791 (0.03%)0.01-6371-637832100637ref|WP_003700993.1|threonyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EEZ56517...
528346Neisseria gonorrhoeae 35/021 (0.03%)0.01-6372-638831100637ref|WP_003690772.1|threonyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EEZ43150...
528355Neisseria gonorrhoeae PID11 (0.03%)0.01-6371-637831100637ref|WP_003698119.1|threonyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EEZ51931...
528354Neisseria gonorrhoeae MS111 (0.03%)0.01-6371-637831100637ref|YP_008502036.1|threonyl-tRNA synthetase [Neisseria gonorrhoeae MS11] ref|WP...
1190578Neisseria meningitidis NM5181 (0.03%)0.01-6371-63783699637ref|WP_021439307.1|threonine--tRNA ligase [Neisseria meningitidis] gb|EQD16217....
1145131Neisseria meningitidis 700821 (0.03%)0.01-6371-63783699637ref|WP_002236827.1|threonyl-tRNA synthetase [Neisseria meningitidis] gb|EJU6583...
485Neisseria gonorrhoeae3 (0.07%)0.01-63712-64883399637ref|WP_017146739.1|threonyl-tRNA synthetase [Neisseria gonorrhoeae]
528352Neisseria gonorrhoeae FA191 (0.03%)0.01-6371-63783299637ref|WP_020996783.1|threonyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EEZ45146...
528360Neisseria gonorrhoeae SK-93-10351 (0.03%)0.01-6371-63783199637ref|WP_003702351.1|threonyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EEZ58758...
487Neisseria meningitidis4 (0.1%)0.01-63712-64883898637ref|WP_017629040.1|threonyl-tRNA synthetase [Neisseria meningitidis]
374833Neisseria meningitidis 0534422 (0.05%)0.01-6371-63783898637ref|YP_001598829.1|threonyl-tRNA synthetase [Neisseria meningitidis 053442] ref...
1095700Neisseria meningitidis 872551 (0.03%)0.01-6371-63783598637ref|YP_005893567.1|threonyl-tRNA synthetase [Neisseria meningitidis G2136] ref|...
1145176Neisseria meningitidis 20074611 (0.03%)0.01-6371-63783598637ref|WP_002258516.1|threonine--tRNA ligase [Neisseria meningitidis] gb|EOC35812....



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