old.robetta.org

A new Robetta server is available for structure prediction.
     
Fragment Libraries    Alanine Scanning    DNA Interface Scan
[ Queue ] [ Submit ]    [ Queue ] [ Submit ]    [ Queue ] [ Submit ]
[ Register / Update ] [ Docs / FAQs ] [ Login ]


     
Job 85037 [SSGCID - NegoA.00612.a] [2018-08-01] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] lysyl-tRNA synthetase - BATCH:85027

Full Structure Predictions  
Model 1

chemical/x-pdb MIME type  PDB file 		Model 2

chemical/x-pdb MIME type  PDB file 		Model 3

chemical/x-pdb MIME type  PDB file 		Model 4

chemical/x-pdb MIME type  PDB file 		Model 5

chemical/x-pdb MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

Images were produced using MolScript and Raster3D!




Plots powered by Plotly.js.

Features and Secondary Structure  
  
1   .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500
  
MSEQNHPQTEPQLDENQIIALRREKLNNIRQQRNAYPNDFKRDSFAADLQAQYGEIGKEELDPQAVPVKIAGRMMLKRQMGKASFATIQDVTGQIQLYLNNKGVSQEVLDDFNHWDLGDIVGAEGTLFKTNHGELTVRVSDIRLLSKSLRPLPDKHKGLSDQETKYRQRYVDLIANEESRNTFIKRSQIIQSVRNFMVGEHYLEVETPMMHPIPGGATAKPFVTHHNALDIPLYLRIAPELYLKRLVVGGLERVFEINRSFRNEGMSVRHNPEFTMIEFYEAFSDYERMMQMAEDIIRNASRTVNGTANITYNGKEVDLESPFERLTILEAIKKYNPHYTDEQLNDAEWLKKEIVKHGESLPPSPGIGSLQLALFEGCAEGKLWNPTFIVDYPVEVSPLARASDTKQGLTERFELFVVGRELANGYSELNDPEDQAERFKSQVAQKDAGDDEAMHYDADYIRAMEFGLPPTGGCGIGIDRLVMLLTDLQTIRDVILFPQMRPE
tmhmm (0) 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%) 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%) 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (4%) 
XXXXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XX
psipred 
--------------HHHHHHHHHHHHHHHHH--------------HHHHHHHHH------------EEEEEEEEEEEE-----EEEEEEE---EEEEEEE-----HHHHHHHH------EEEEEEEEE------EEEEEEEEEEEE---------------HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH---EEE------------------EEEE-----HHHHHHHHHHHHHHHH-----EEEE-HHEE----------HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--EEEE---EEE-------EEEHHHHHHHH----------HHHHHHHHHHH------------EEEE----EEEE-----------------HHHH----------EEEEEE--EEEEEEEEEE--HHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---------EEEHHHHHHHHH-----HHH----------

# SignalP-4.0 gram- predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    36	    0.123
  max. Y    36	    0.117
  max. S    10	    0.135
  mean S     1-35   0.109
       D     1-35   0.113    0.570  NO
Name=tmp_signalp_seq	SP='NO' D=0.113 D-cutoff=0.570 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-503     alignment     4up7A_308     1-529   0.9120   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
940296Neisseria gonorrhoeae TCDC-NG081071 (0.03%)0.01-5031-503683100503ref|YP_208507.1|lysyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090] ref|YP...
521006Neisseria gonorrhoeae NCCP119451 (0.03%)0.01-5031-503683100503ref|YP_002002342.1|lysyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945] ref|...
662598Neisseria meningitidis alpha141 (0.03%)0.01-5031-50368499503ref|YP_003083428.1|lysyl-tRNA synthetase [Neisseria meningitidis alpha14] ref|W...
546265Neisseria lactamica ATCC 239701 (0.03%)0.01-5031-50368499503ref|WP_004467468.1|lysyl-tRNA synthetase [Neisseria lactamica] gb|EEZ74441.1| l...
1095699Neisseria meningitidis 980801 (0.03%)0.01-5031-50368798503ref|WP_002236536.1|lysyl-tRNA synthetase [Neisseria meningitidis] gb|EJU60327.1...
1190575Neisseria meningitidis NM0031 (0.03%)0.01-5031-50368698503ref|WP_021438072.1|lysine--tRNA ligase [Neisseria meningitidis] gb|EQD04028.1| ...
489653Neisseria lactamica 020-061 (0.03%)0.01-5031-50368598503ref|YP_004048150.1|lysyl-tRNA synthetase [Neisseria lactamica 020-06] ref|WP_01...
1190577Neisseria meningitidis NM05521 (0.03%)0.01-5031-50368598503ref|WP_021439089.1|lysine--tRNA ligase [Neisseria meningitidis] gb|EQD12645.1| ...
1190581Neisseria meningitidis NM28661 (0.03%)0.01-5031-50368598503ref|YP_005882981.1|lysyl-tRNA synthetase [Neisseria meningitidis alpha710] ref|...
935593Neisseria meningitidis M04-2401961 (0.03%)0.01-5031-50368498503ref|YP_005897512.1|lysyl-tRNA synthetase [Neisseria meningitidis M04-240196] re...
1190579Neisseria meningitidis NM31731 (0.03%)0.01-5031-50368498503ref|NP_274437.1|lysyl-tRNA synthetase [Neisseria meningitidis MC58] ref|YP_0...
1145175Neisseria meningitidis 20020041 (0.03%)0.01-5031-50368498503ref|YP_975360.1|lysyl-tRNA synthetase [Neisseria meningitidis FAM18] ref|WP_...
1145144Neisseria meningitidis NM6071 (0.03%)0.01-5031-50368498503ref|YP_002342941.1|lysyl-tRNA synthetase [Neisseria meningitidis Z2491] ref|YP_...
1069621Neisseria meningitidis NM30811 (0.03%)0.01-5031-50368498503ref|WP_002241730.1|lysyl-tRNA synthetase [Neisseria meningitidis] emb|CCI73012....
1069609Neisseria meningitidis 930041 (0.03%)0.01-5031-50368498503ref|WP_002234030.1|lysyl-tRNA synthetase [Neisseria meningitidis] gb|EJU54069.1...
1069608Neisseria meningitidis 930031 (0.03%)0.01-5031-50368498503ref|WP_002232672.1|lysyl-tRNA synthetase [Neisseria meningitidis] gb|EJU52720.1...
1145149Neisseria meningitidis NM362 (0.05%)0.01-5031-50368498503ref|WP_002222298.1|lysyl-tRNA synthetase [Neisseria meningitidis] gb|EGC57000.1...
1145177Neisseria meningitidis NM1341 (0.03%)0.01-5031-50368398503ref|WP_002223635.1|lysyl-tRNA synthetase [Neisseria meningitidis] emb|CBA07339....
1069622Neisseria meningitidis NM30011 (0.03%)0.01-5031-50368398503ref|WP_002243646.1|lysyl-tRNA synthetase [Neisseria meningitidis] gb|EJU78432.1...
1069619Neisseria meningitidis NM26571 (0.03%)0.01-5031-50368398503ref|WP_002240617.1|lysyl-tRNA synthetase [Neisseria meningitidis] emb|CBA04495....



Robetta is available for NON-COMMERCIAL USE ONLY at this time
[ Terms of Service ]
Copyright © 2004-2011 University of Washington