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Job 85044 [SSGCID - NegoA.01238.a] [2018-08-01] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] seryl-tRNA synthetase - BATCH:85027

Full Structure Predictions  
Model 1

chemical/x-pdb MIME type  PDB file 		Model 2

chemical/x-pdb MIME type  PDB file 		Model 3

chemical/x-pdb MIME type  PDB file 		Model 4

chemical/x-pdb MIME type  PDB file 		Model 5

chemical/x-pdb MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

Images were produced using MolScript and Raster3D!




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Features and Secondary Structure  
  
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MLDIQLLRSNTAAVAERLARRGYEFDTARFDALEERRKSVQVKTEELQASRNSISKQIGALKGQGKHEEAQAAMDQVAQIKTDLEQAAADLDAVQKELDAWLLSIPNLPHESVPPGKDETENVEVRKVGTPREFDFEIKDHVDLGEPLGLDFEGGAKLSGARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEHYTPYIVDDTTLQGTGQLPKFAEDLFHVTRGGDETKTTQYLIPTAEVTLTNTVAGSIIPSEQLPLKLTAHSPCFRSEAGSYGKDTRGLIRQHQFDKVEMVQIVHPEKSYGALEEMVGHAENILKALELPYRVITLCTGDMGFSAAKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKARFKDENGKNRLVHTLNGSGLAVGRTLVAVLENHQNADGSINIPAALQPYMGGVTKLEVK
tmhmm (0) 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%) 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (14%) 
-----------------------------XXXXXXXXXXXXXXXXXXXXX----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (5%) 
-------------------------------------------------XXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXX
psipred 
---HHHHHH-HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------EEEEEE-----------HHHHHHHHH---HHHHHHH----EEE---HHHHHHHHHHHHHHHHHHHH---EEEE-----HHHHHHHH---------EEEEE----------------HHHHHHHH--EEE-HHH--EEEE-------------------EEEEEEEEEEEEEEE--HHHHHHHHHHHHHHHHHHHHH----EEEE---------HHHH---HHHHHH----EEE----------------EEEEE------EE-----------HHHHHHHHH-----------HHHHHH----EEE---

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    18	    0.107
  max. Y    15	    0.133
  max. S    11	    0.192
  mean S     1-14   0.165
       D     1-14   0.145    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.145 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-431     alignment     1wleA_201     1-465   0.8641   LIGASE


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
940296Neisseria gonorrhoeae TCDC-NG081071 (0.03%)1E-1731-4311-431615100431ref|YP_002002185.1|seryl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945] ref|...
528358Neisseria gonorrhoeae PID3321 (0.03%)1E-1731-4311-431614100431ref|YP_208397.1|seryl-tRNA synthetase [Neisseria gonorrhoeae FA 1090] ref|WP...
528354Neisseria gonorrhoeae MS111 (0.03%)1E-1731-4311-431614100431ref|YP_008503037.1|seryl-tRNA synthetase [Neisseria gonorrhoeae MS11] ref|WP_00...
528351Neisseria gonorrhoeae F621 (0.03%)1E-1721-4311-431612100431ref|WP_003705861.1|seryl-tRNA synthetase [Neisseria gonorrhoeae] gb|EFF40245.1|...
1190579Neisseria meningitidis NM31731 (0.03%)1E-1731-4311-43161598431ref|NP_274688.1|seryl-tRNA synthetase [Neisseria meningitidis MC58] ref|YP_0...
1095699Neisseria meningitidis 980801 (0.03%)1E-1731-4311-43161598431ref|WP_002245154.1|serine--tRNA ligase [Neisseria meningitidis] gb|ELK57951.1| ...
1145195Neisseria meningitidis NM32231 (0.03%)1E-1731-4311-43161598431ref|WP_002229824.1|seryl-tRNA synthetase [Neisseria meningitidis] gb|EHP14911.1...
1069622Neisseria meningitidis NM30011 (0.03%)1E-1731-4311-43161498431ref|WP_002243764.1|seryl-tRNA synthetase [Neisseria meningitidis] gb|EJU77455.1...
935594Neisseria meningitidis M133991 (0.03%)1E-1731-4311-43161498431ref|WP_002222132.1|seryl-tRNA synthetase [Neisseria meningitidis] gb|EGC57419.1...
935593Neisseria meningitidis M04-2401961 (0.03%)1E-1731-4311-43161398431ref|YP_005897291.1|seryl-tRNA synthetase [Neisseria meningitidis M04-240196] re...
1145149Neisseria meningitidis NM362 (0.05%)1E-1731-4311-43161398431ref|YP_975570.1|seryl-tRNA synthetase [Neisseria meningitidis FAM18] ref|YP_...
1069621Neisseria meningitidis NM30811 (0.03%)1E-1731-4311-43161398431ref|WP_002242942.1|seryl-tRNA synthetase [Neisseria meningitidis] gb|EJU77090.1...
1145157Neisseria meningitidis 736961 (0.03%)1E-1721-4311-43161298431ref|WP_002255991.1|serine--tRNA ligase [Neisseria meningitidis] gb|EOC10759.1| ...
1145178Neisseria meningitidis 980021 (0.03%)1E-1721-4311-43161298431ref|YP_003083661.1|seryl-tRNA synthetase [Neisseria meningitidis alpha14] ref|W...
1069620Neisseria meningitidis NM27951 (0.03%)1E-1731-4311-43161497431ref|WP_002241874.1|seryl-tRNA synthetase [Neisseria meningitidis] gb|EJU75079.1...
1190570Neisseria meningitidis 20020301 (0.03%)1E-1731-4311-43161497431ref|YP_001599704.1|seryl-tRNA synthetase [Neisseria meningitidis 053442] ref|WP...
487Neisseria meningitidis4 (0.1%)1E-1731-43111-44161497431ref|WP_019742996.1|seryl-tRNA synthetase [Neisseria meningitidis]
1190581Neisseria meningitidis NM28661 (0.03%)1E-1731-4311-43161497431ref|YP_005883257.1|seryl-tRNA synthetase [Neisseria meningitidis alpha710] ref|...
1095667Neisseria meningitidis 772211 (0.03%)1E-1731-4311-43161397431ref|WP_002212638.1|seryl-tRNA synthetase [Neisseria meningitidis] gb|EFM05181.1...
1145172Neisseria meningitidis 20050791 (0.03%)1E-1731-4311-43161397431ref|WP_002259073.1|serine--tRNA ligase [Neisseria meningitidis] gb|EOC39839.1| ...



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