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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 .
	MKASQFFISTLKEAPAEAAFASHKLMIRAGLIKANASGLYTWMPMGLRVLRKVENVVREEMARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHERDFCMGPTCEEVIADIVRKEINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDAYSFHADYASLQATYDAMYDAYCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGEDVIAYSDTSDYAANIELAPTLPLKGERAAAQAVLTKVHTPNVKTIESLVEFLNIPVEQTLKSIVVEGENEGELVLLLLRGDHEFNDIKAEKLAGVKSPLTMASPAAIVEQFGANGGSLGPVGFTGKVYADFATEKGADWVIGANEDDYHYTGFNFGRDAAEPEFVDLRNVVEGDESPDGQGRLKLARGIEVGHVFQLRGKYTQAMNVSFLDNNGKSQIMEMGCYGIGITRVVAAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADRIYAELLAAGADVLLDDRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRDNEAQAVAIGEIVARVTASLNA
tmhmm (0)	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (6%)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXX-----------------------------------------------------------
coiled-coils (0%)	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (2%)	X-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------X------------------X
psipred	---HHHHHHHH---HHH--HHHHHHHHHH---------EEEE-HHHHHHHHHHHHHHHHHHHH---EEEE------HHHHH----HHH-----EEEE-----EEEE----HHHHHHHHH-----HHH--HHHHH--EEE-----------HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH----EEEEE----------HHHHHHHH--HHHEE----------EEE------------------EE-------HHHHHHHH---HHHHEEEEEEEEE----EEEEEE-------HHHHHHHH----------HHHHHHHH---------------EEEEE-----------------------------------HHHHH----------HHHHHH------EE------------EEE-----EEEEEEEE---HHHHHHHHHHHHH---------------EEEEEE------HHHHHHHHHHHHHHHH---EEEEE-----HHHHHHHHHH----EEEEE---HHH--EEEEEE-----EEEEEHHHHHHHHHHHH--

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    22	    0.184
  max. Y    22	    0.195
  max. S    14	    0.312
  mean S     1-21   0.224
       D     1-21   0.207    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.207 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-570	alignment	5e6mA_305	1-519	0.8592	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
528351	Neisseria gonorrhoeae F62	1 (0.03%)	0.0	1-570	30-599	793	100	570	ref|YP_002001983.1|	prolyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945] ref...
940296	Neisseria gonorrhoeae TCDC-NG08107	2 (0.05%)	0.0	1-570	30-599	793	100	570	ref|YP_005889891.1|	prolyl-tRNA synthetase [Neisseria gonorrhoeae TCDC-NG08107] ...
528360	Neisseria gonorrhoeae SK-93-1035	1 (0.03%)	0.0	1-570	11-580	792	100	570	ref|WP_003691344.1|	prolyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EEZ43835.1...
528356	Neisseria gonorrhoeae PID18	2 (0.05%)	0.0	1-570	11-580	791	100	570	ref|WP_003692936.1|	prolyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EEZ50411.1...
485	Neisseria gonorrhoeae	3 (0.07%)	0.0	1-570	1-570	790	100	570	ref|WP_010357741.1|	prolyl-tRNA synthetase [Neisseria gonorrhoeae]
528354	Neisseria gonorrhoeae MS11	2 (0.05%)	0.0	1-570	1-570	790	100	570	ref|YP_008502289.1|	prolyl-tRNA synthetase [Neisseria gonorrhoeae MS11] ref|WP_0...
242231	Neisseria gonorrhoeae FA 1090	1 (0.03%)	0.0	1-570	1-570	786	100	570	ref|YP_207711.1|	prolyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090] ref|W...
295996	Neisseria meningitidis alpha275	2 (0.05%)	0.0	1-570	30-599	797	98	570	emb|CBA07634.1|	Prolyl-tRNA synthetase [Neisseria meningitidis alpha275]
662598	Neisseria meningitidis alpha14	2 (0.05%)	0.0	1-570	1-570	795	98	570	ref|YP_003083356.1|	prolyl-tRNA synthetase [Neisseria meningitidis alpha14] ref|...
1069622	Neisseria meningitidis NM3001	1 (0.03%)	0.0	1-570	1-570	795	98	570	ref|WP_002243593.1|	prolyl-tRNA synthetase [Neisseria meningitidis] gb|EJU78866....
996307	Neisseria meningitidis alpha522	1 (0.03%)	0.0	1-570	1-570	795	98	570	emb|CCA44457.1|	prolyl-tRNA synthetase [Neisseria meningitidis alpha522]
1053687	Neisseria meningitidis NM220	1 (0.03%)	0.0	1-570	30-599	794	98	570	ref|WP_002230573.1|	prolyl-tRNA synthetase [Neisseria meningitidis] gb|EHP15032....
1145176	Neisseria meningitidis 2007461	1 (0.03%)	0.0	1-570	1-570	794	98	570	ref|WP_002234966.1|	prolyl-tRNA synthetase [Neisseria meningitidis] gb|EJU53006....
1069609	Neisseria meningitidis 93004	1 (0.03%)	0.0	1-570	1-570	793	98	570	ref|WP_002233981.1|	prolyl-tRNA synthetase [Neisseria meningitidis] gb|EJU54261....
935588	Neisseria meningitidis M01-240355	1 (0.03%)	0.0	1-570	1-570	792	98	570	ref|YP_005901907.1|	prolyl-tRNA synthetase [Neisseria meningitidis M01-240355] r...
374833	Neisseria meningitidis 053442	2 (0.05%)	0.0	1-570	30-599	792	98	570	ref|YP_001599382.1|	prolyl-tRNA synthetase [Neisseria meningitidis 053442] ref|W...
1055328	Neisseria meningitidis NM233	1 (0.03%)	0.0	1-570	30-599	792	98	570	ref|WP_002229564.1|	prolyl-tRNA synthetase [Neisseria meningitidis] gb|EHP15616....
1145191	Neisseria meningitidis NM27	1 (0.03%)	0.0	1-570	1-570	791	98	570	ref|WP_002259680.1|	proline--tRNA ligase [Neisseria meningitidis] gb|EOC53927.1|...
1145177	Neisseria meningitidis NM134	1 (0.03%)	0.0	1-570	1-570	789	98	570	ref|WP_002217025.1|	prolyl-tRNA synthetase [Neisseria meningitidis] gb|EGC51349....
1145195	Neisseria meningitidis NM3223	1 (0.03%)	0.0	1-570	1-570	789	98	570	ref|WP_002261087.1|	proline--tRNA ligase [Neisseria meningitidis] gb|EOC76530.1|...