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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780 . 790 . 800 . 810 .
	MTQKEKHFEEYAALATLPLRDVVVYPHMVLPLFVGRPKSIAALENAITREEPVFLLAQTDAAVEEPVATDLYQTGTVAQVLQVLKLPDGTVKVLVEGLYRGRVLTIEDTGGLFVSHIEAVVEEDTGGNTDLEAVRRTLLAQFEQYAKLNKKIPAEIIGSINGIAENSRLTDTVAAHLQLKLAQRQQILEIPEIGKRMEFLLAKLESELDIMQAEKRIRGRVKRQMEKSQREYYLNEQIKAIHKELGEEDENGELDALEAGIKKAGMTKEAEEKCLSELKKLKMMPPMSAESTVVRNYIDTLLGLPWKKKSRVSKDIAKAGLVLDADHYGLEKVKERILEYLAVQKRMDKLKGPILCLVGPPGVGKTSLGESIAKATGRKYVRMALGGVRDESEIRGHRRTYIGSMPGKILQNMAKAGVRNPLFLLDEIDKLGSDFRGDPASALLEVLDHEQNNKFADHYAEVDYDLSDVMFIATSNSLNIPTPLLDRMEIIRLSGYTEDEKINIAMQYLVPKQMKRNGVKEGELVVEESAVRDIIRYYTREAGVRSLDREIAKICRKVVMQITLNEDKKRLSETKKTSKAKPRAVKVNEKNLHDYLGVRRFDYGVAESENRIGQVTGLAWTEVGGELLTVEAAALPGKGMIQCTGQLGDVMKESVSAAWSVVRSRAESVGLAPDFYEKKDIHVHVPEGATPKDGPSAGIAMTLAMVSAFTKIPVRADVAMTGEITLRGEVLPIGGLKEKLLAALRGGIKHVLIPKDNVKDLEEIPENVKTGLTIHPVKWIDEVLALGLESRPESWAEPSAAEAAAESASKPKPRSRAIKH
tmhmm (0)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (9%)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXX--------XXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXX-----
coiled-coils (0%)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (11%)	XXXXXXXXXXXXX-------------------------------------------------X----------------------------------------------------------XXXXXXXXXXX-----------------------------------------------------------------------------------------XXXXX--------------------XX-XX--------XXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXX
psipred	------------EEEEEEE---EE----EEEEEE--HHHHHHHHHHHHH---EEEEEE-------------EEEEEEEEEEHHEE-----EEEEEEEEEEEEEEE-------EEEEEEEE--------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH------------------HHHHHHHHHHHHH----HHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------EEEEE--------HHHHHHHHHHH---EEEE-----------------------HHHHHHHH------EEEE-------------HHHHHHHH------------HHH--------EEE---------HHHHHHHHHHH------------HHHHHHH-HHHH----HHH----HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---------------------EE-HHHHHHH-------HHHH---------EEEEEE-----EEEEE-----------------HHHHHHHHHHHHHHHHHHHH-------HHH----EEEE---------HHHHHHHHHHHHHH--------EEEEEEE-----EEEE--HHHHHHHHHH----EEEE-HHHHHHHHHHHHHHH---EEEEE--HHHHHHHHH--------------------------------
sam	---------------------EEEE--EEEE------HHHHHHHHHHH----EEEEEE---------HHHHHHH-HHHHHHHHH-----EEEEEEE-EEEEEEEEEE----EEEEEEEEEE------HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH---HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH---HHHH-H----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH--EEEEE----------HHHHHHHHH-HHHHHHHH-----HHH------EE-----HHHHHHHHHH-----HHHHHHHHHH-------HHHHEEEE--HHHH------EEEEEEE---EEEEE--------HHH---HHHHH-----HHHHHHHHHHHH-HHHHHH-------EEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH-----EEEEEH--HHHH---EEE------------EEEEEEEEE----EEEEEEEEE----EEE-------HHHHHHHHHHHHHHHHHHH----HHHH----EEEEE----------HHHHHHHHHHHHHHH----EEEEEEE-EEEE--EEE----HHHHHHHHHH---EEEEE----HHHHHHHHHHHHH---EEE--HHHHHHHHHHHH------HHHHHHHHHHHHHHH---------
jufo	-------------EEEEEE--EEEE--EEEEEE--HHHHHHHHHHHHH----EEEEEE-----------------EEEEHHHHH-----EEEEEEEEEEEEEEE--------EEEEEE-----------HHHHHHHHHHHHHHHHHHHH----HHHHHHHH-----HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHH--------------HHHHHHHHHHH----HHHHHHHHHHHHHHH---------HHHHHHHHHHHH------------HHHHHHHHH------HHHHHHHHHHHHHHHHH------EEEEE-----HHHHHHHHHHHHH---EEEEE----------------------HHHHHHHHHH------EEHHHH-----------HHHHHHHHHHHHH-EE-------------EEEEEE---------HHHHHHHHH-----------------------------------HHHHHHHHHH------HHHHHHHHHHHHH-------------------------------EE----HH---------------------EEEEE----EEEEEEEEE------EEE------HHHHHHHHHHHH---------------------------------HHHHHHHHHHHHHHHH-------EEEEEEEE----------HHHHHHHHHHH-EEEEEEE---HHHHHH--HHHH--EEEEEEEHHHHHHHHHHH-------------------------------

# SignalP-4.0 gram- predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    42	    0.202
  max. Y    42	    0.183
  max. S    40	    0.238
  mean S     1-41   0.127
       D     1-41   0.157    0.570  NO
Name=tmp_signalp_seq	SP='NO' D=0.157 D-cutoff=0.570 Networks=SignalP-noTM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-255	alignment	5fqdB_305	1-381	0.927500	--
	256-820	alignment	4yplA_201	1-537	0.919200	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
940296	Neisseria gonorrhoeae TCDC-NG08107	2 (0.05%)	0.0	1-820	1-820	904	100	820	ref|YP_002001726.1|	hypothetical protein NGK_1101 [Neisseria gonorrhoeae NCCP119...
528348	Neisseria gonorrhoeae DGI2	1 (0.03%)	0.0	1-820	1-820	904	100	820	ref|WP_003704022.1|	peptidase [Neisseria gonorrhoeae] gb|EFE04226.1| ATP-depende...
528356	Neisseria gonorrhoeae PID18	1 (0.03%)	0.0	1-820	1-820	904	100	820	ref|WP_003697099.1|	peptidase [Neisseria gonorrhoeae] gb|EEZ50200.1| ATP-depende...
528351	Neisseria gonorrhoeae F62	1 (0.03%)	0.0	1-820	1-820	904	100	820	ref|YP_207901.1|	hypothetical protein NGO0775 [Neisseria gonorrhoeae FA 1090]...
1069608	Neisseria meningitidis 93003	1 (0.03%)	0.0	1-820	1-820	908	98	820	ref|WP_002232478.1|	peptidase [Neisseria meningitidis] gb|EJU52509.1| ATP-depend...
1095691	Neisseria meningitidis 97014	1 (0.03%)	0.0	1-820	1-820	906	98	820	ref|WP_002247466.1|	ATP-dependent protease La [Neisseria meningitidis] gb|ELK779...
1095670	Neisseria meningitidis NM3642	1 (0.03%)	0.0	1-820	1-820	904	98	820	ref|WP_002250690.1|	ATP-dependent protease La [Neisseria meningitidis] gb|ELL202...
1190580	Neisseria meningitidis NM3230	1 (0.03%)	0.0	1-820	1-820	903	98	820	ref|YP_005903794.1|	endopeptidase La [Neisseria meningitidis NZ-05/33] ref|WP_00...
862513	Neisseria meningitidis ATCC 13091	1 (0.03%)	0.0	1-820	1-820	903	98	820	ref|WP_002213507.1|	peptidase [Neisseria meningitidis] gb|EFM04515.1| endopeptid...
1145135	Neisseria meningitidis 96024	1 (0.03%)	0.0	1-820	1-820	903	98	820	ref|WP_002253647.1|	ATP-dependent protease La [Neisseria meningitidis] gb|EOB738...
1145144	Neisseria meningitidis NM607	1 (0.03%)	0.0	1-820	1-820	903	98	820	ref|YP_002342745.1|	ATP-dependent protease [Neisseria meningitidis Z2491] ref|YP...
1069622	Neisseria meningitidis NM3001	1 (0.03%)	0.0	1-820	1-820	901	98	820	ref|WP_002243525.1|	peptidase [Neisseria meningitidis] gb|EJU78722.1| ATP-depend...
662598	Neisseria meningitidis alpha14	1 (0.03%)	0.0	1-820	1-820	901	98	820	ref|YP_003083231.1|	ATP-dependent Lon protease [Neisseria meningitidis alpha14] ...
1145178	Neisseria meningitidis 98002	1 (0.03%)	0.0	1-820	1-820	900	98	820	ref|WP_002217155.1|	peptidase [Neisseria meningitidis] gb|EGC51247.1| endopeptid...
1145195	Neisseria meningitidis NM3223	1 (0.03%)	0.0	1-820	1-820	900	98	820	ref|WP_002229478.1|	peptidase [Neisseria meningitidis] gb|EHP15190.1| endopeptid...
1069616	Neisseria meningitidis 98008	1 (0.03%)	0.0	1-820	1-820	900	98	820	ref|WP_002237945.1|	peptidase [Neisseria meningitidis] gb|EJU67292.1| ATP-depend...
1190581	Neisseria meningitidis NM2866	1 (0.03%)	0.0	1-820	1-820	900	98	820	ref|YP_005882775.1|	putative ATP-dependent protease [Neisseria meningitidis alph...
1069615	Neisseria meningitidis NM576	1 (0.03%)	0.0	1-820	1-820	899	98	820	ref|WP_002235816.1|	peptidase [Neisseria meningitidis] emb|CBA04361.1| ATP-depen...
1145155	Neisseria meningitidis NM1482	1 (0.03%)	0.0	1-820	1-820	899	98	820	ref|WP_010791155.1|	ATP-dependent protease La [Neisseria meningitidis] gb|EOC062...
1069609	Neisseria meningitidis 93004	1 (0.03%)	0.0	1-820	1-820	899	98	820	ref|WP_002233897.1|	peptidase [Neisseria meningitidis] gb|EJU54595.1| ATP-depend...