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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780 . 790 . 800 . 810 . 820 . 830 . 840 . 850 . 860 . 870 . 880 . 890 . 900 . 910 . 920 .
	MTDYSKTVNLLESPFPMRGNLAKREPAWLKSWYEQKRYQKLREIAKGRPKFILHDGPPYANGDIHIGHAVNKILKDIIIRSKTQAGFDAPYVPGWDCHGLPIEVMVEKLHGKDMPKARFRELCREYAAEQIARQKKDFIRLGVLGDWDNPYLTMDFKTEADTVRMLGEIYKSGYLYRGAKPVQFCLDCGSSLAEAEVEYKDKVSPAIDVAYPFKDTAALAAAFGLAGIEGKAFAVIWTTTPWTLPASQAVSAGADVVYQLIDTPKGKLVLAKDLAEGALKRYGFSDGIAILAETTGDKLENLHMNHPFLERDIPMLNGEHVTTDAGTGLVHTAPAHGLEDYAVCNKYGIELYNPVNAEGKYISETPRVAGMSVWEANPVILQWPEETGNLLASSKIEHSYAHCWRHKTPLIYRATGQWFVGMDKAGSDGKTLRDKAIKAVDDTEFFPPWGRARLESMIEGRPDWVVSRQRYWGTPMTFFVHKETGELHPNSAELLEKVAQRIEEKGIEAWFSLDKSELLSAEDCEHYDKLPDTMDVWFDSGSTHYSVVKQREELEWPADLYLEGSDQHRGWFQSSMLTGCASSMGRAPYKQLLTHGFVVDQNGRKMSKSIGNVVAPQEVYNEFGADILRLWAASTDYSGELAISKEILKRVTESYRRIRNTLSFLFANLSDFNPIGDAVQQADMVEIDRYALVLARRLQERLAGGYYPRYAFHFAVKDIVSFCSEDLGAFYLDILKDRLYTTKADSRARRSAQTALYHITRSLVLLIAPILCFTGEEAWDIIGGGEEDSVLFHTWHEFPAINEKAEAELVKKWTAIREAREAVTAAIEPLRADKTVGSSLQAEAEITAPEEMAGYLNALGEELRFALLVSKAEVKVGDELAVAAKASDGEKCERCWHYTRDVGAVAGYETVCKRCAENVGGEGETRHYA
tmhmm (0)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (1%)	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (1%)	X---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XX-----------------------------------------------------------------------------------------XXXXXX
psipred	---HHHH-------------HHHHHHHHHHHHHH---HHHHHHH------EEEE-----------HHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHEEEE----------HHHHHHHHHHHHHHHH---EE---EE----------HHHHHH--------EEEEEEEE-----HHHH----------EEEEEE--HHHHHH--EEEE----EEEEEE----EEEEEHHHHHHHHHHH-----EEEEEEE-HHHH---EEE---------EE-------------EEE-----HHHHHHHHHH------------EE-----------HHH--HHHHHHHHH---EE----EE-----------EEEEE----EEEEE----HHHHHHHHHHHHH---EEEE--HHHHHHHHHH-------EE-------EEEEEEE----EEE---HHHHHHHHHHHHH------------EE---------EE---EEE--HHHHHHHHHH-----------EEEEEE-HHHHHHHHHHHHHHHHHH-----HHHHH----EE----------------HHHHHHHH--HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH--HHHH----HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------EEEEE------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------EEEEEE-HHHHHHHHHHHHHHHHHEEE-EEEEE---EEEEEEE---------------------------HHHHHHH----------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    25	    0.130
  max. Y    25	    0.138
  max. S    21	    0.215
  mean S     1-24   0.141
       D     1-24   0.139    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.139 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-929	alignment	1ffyA_201	1-917	0.9433	LIGASE/RNA

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
528359	Neisseria gonorrhoeae SK-92-679	1 (0.03%)	0.0	1-929	1-929	1210	100	929	ref|WP_003700877.1|	isoleucyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EEZ5621...
528354	Neisseria gonorrhoeae MS11	1 (0.03%)	0.0	1-929	1-929	1209	100	929	ref|YP_008501828.1|	isoleucyl-tRNA synthetase [Neisseria gonorrhoeae MS11] ref|W...
528358	Neisseria gonorrhoeae PID332	1 (0.03%)	0.0	1-929	1-929	1208	100	929	ref|YP_207244.1|	isoleucyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090] re...
528360	Neisseria gonorrhoeae SK-93-1035	1 (0.03%)	0.0	1-929	1-929	1208	100	929	ref|WP_003702237.1|	isoleucyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EEZ5851...
528345	Neisseria gonorrhoeae 1291	1 (0.03%)	0.0	1-929	1-929	1207	100	929	ref|WP_003687318.1|	isoleucyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EEH6136...
528355	Neisseria gonorrhoeae PID1	1 (0.03%)	0.0	1-929	1-929	1206	100	929	ref|WP_003698016.1|	isoleucyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EEZ5170...
528351	Neisseria gonorrhoeae F62	1 (0.03%)	0.0	1-929	1-929	1205	100	929	ref|WP_003704942.1|	isoleucyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EFF4074...
528356	Neisseria gonorrhoeae PID18	1 (0.03%)	0.0	1-929	1-929	1205	100	929	ref|WP_003696664.1|	isoleucyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EEZ4938...
528348	Neisseria gonorrhoeae DGI2	1 (0.03%)	0.0	1-929	1-929	1204	100	929	ref|WP_003704555.1|	isoleucyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EFE0350...
940296	Neisseria gonorrhoeae TCDC-NG08107	1 (0.03%)	0.0	1-929	1-929	1203	100	929	ref|YP_005888891.1|	isoleucyl-tRNA synthetase [Neisseria gonorrhoeae TCDC-NG0810...
528352	Neisseria gonorrhoeae FA19	1 (0.03%)	0.0	1-929	1-929	1210	99	929	ref|WP_003692514.1|	isoleucyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EEZ4491...
521006	Neisseria gonorrhoeae NCCP11945	1 (0.03%)	0.0	1-929	1-929	1207	99	929	ref|YP_002000725.1|	isoleucyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945] ...
485	Neisseria gonorrhoeae	2 (0.05%)	0.0	1-929	1-929	1209	98	929	ref|WP_010356618.1|	isoleucyl-tRNA synthetase [Neisseria gonorrhoeae]
1095667	Neisseria meningitidis 77221	1 (0.03%)	0.0	1-929	1-929	1208	98	929	ref|WP_002251525.1|	isoleucine--tRNA ligase [Neisseria meningitidis] gb|ELL26870...
1190578	Neisseria meningitidis NM518	1 (0.03%)	0.0	1-929	1-929	1203	98	929	ref|WP_002219811.1|	isoleucyl-tRNA synthetase [Neisseria meningitidis] gb|EGC523...
1145131	Neisseria meningitidis 70082	1 (0.03%)	0.0	1-929	1-929	1203	98	929	ref|WP_002237348.1|	isoleucyl-tRNA synthetase [Neisseria meningitidis] gb|EJU627...
1069622	Neisseria meningitidis NM3001	1 (0.03%)	0.0	1-929	1-929	1197	98	929	ref|WP_002243829.1|	isoleucyl-tRNA synthetase [Neisseria meningitidis] gb|EJU772...
604162	Neisseria meningitidis 8013	1 (0.03%)	0.0	1-929	1-929	1195	98	929	ref|YP_005879232.1|	isoleucyl-tRNA synthetase (isoleucine--tRNA ligase; IleRS) [...
862513	Neisseria meningitidis ATCC 13091	1 (0.03%)	0.0	1-929	1-929	1194	98	929	ref|WP_002214576.1|	isoleucyl-tRNA synthetase [Neisseria meningitidis] gb|EFM037...
1190580	Neisseria meningitidis NM3230	1 (0.03%)	0.0	1-929	1-929	1194	98	929	ref|WP_002240012.1|	isoleucyl-tRNA synthetase [Neisseria meningitidis] gb|EJU698...