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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780 . 790 . 800 . 810 . 820 . 830 . 840 . 850 . 860 . 870 . 880 . 890 . 900 . 910 . 920 . 930 . 940
	MLDKYSPAEIESKHYQNWESQGYFQPDMDLTKPSFSIQLPPPNVTGTLHMGHAFNQTIMDGLTRYYRMKGCNTAWIPGTDHAGIATQIVVERQLAAQNVSRHDLGREKFLEKVWEWKEVSGGTITQQMRRVGCSADWTREYFTMDGVRAETVTEVFVRLYEQGLIYRGKRLVNWDPVLGTAVSDLEVESMEEQGSMWHIRYPLADNPTEAVIVATTRPETLLGDAAVAVNPEDERYTHLIGKELILPLTGRTIPVIADEYVEKDFGTGCVKITPAHDFNDYEVGKRHDTRLINVFDLEAKVLANAEVFNFKGEAQPGFSLPEKYAGLDRFAARKQMVADLQEQGFLVEIKPHTLMTPKGDRTGSVIEPMLTSQWFVAMSATPNGGEPDNEFKGLSLADKAKKAVDSGAVRFIPENWVNTYNQWMNNIQDWCISRQLWWGHQIPAWYDEAGNVYVARNQAEAEKQAGKTGLTREEDVLDTWFSSALVPFSTLGWPSETDELKAFLPSNVLVTGYEIIFFWVARMIMMTTHFTGKVPFKAVYIHGIVRDHEGKKMSKSEGNVIDPVDLIDGIGLDKLLMKRTTGLRKPETAPKVEEATKKLFPEGIPSMGADALRFTMASYASLGRSVNFDFKRAEGYRNFCNKIWNATNFVLMNTENQDCGYGATAAEPRGHSFPDMWIIGRLNQTIEQVTQAYETYRFDLAAETLYSFVWNDYCDWYLELAKVQLQTGCASRQRATRHTLLRVLEAALRLLHPIIPFITEELWQTVAPMCDAKTADSIMLARFPETDGGEIVQTAFGQMTVLQDLIGAVRNLRGETGIQPNVKAPLFVESADDLADYLKYLPMMTRLTEARQVAALPESGDAPVAVCNGARLMLKVEIDKAAETARLSKEAEKLQKALDKLNAKLSKPGYTEKAPAHLVEKDKADLAELEDKMAKVQNQLAKLKD
tmhmm (0)	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (3%)	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (4%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX--------------XXXXXXXXXXXXXXXXXXXXX------
disordered (4%)	XX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXX------------------------------------------------------------------------------XXXXXXXXXXXX-------------------------XXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXX
psipred	------HHHHHHHHHHHHHH--------------EEEE-----------HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHH----HHH--HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH---EEE----------------------------EEEEEEEE------EEEEE----------EEEEE----EEEEEEE--EEEEE----EEEEE------------EEEE-----HHHHHHHHH-------------EE-------------------HHHH----HHHHHHHHHHHHHH---EE----------EE-----EEEEE----EEEEE------HHHH--HHHHHHHHHHHHHHH---EEEE-HHHHHHHHHHHH-----EEEEE--------EEE-----EEE---HHHHHHH------EE----EEEEEE---HHHHH-------HHHH-----EEE-----HHHHHHHHHHHHHHHH-----HHHHEE--EEE----------------HHHHHHH--HHHHHHHHH-----HHHHHHHHHHHHH------------HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---HHHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------EEEE------------HHHHHHHHHHHHHHHHHHHHHHH--------EEEEEE--HHHHHHHHHHHHHHHHHH-EEEE--------EEEEEEEEEEEEEEE--HHHHHHHHHHHHHHHHHHHHHHH-----HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    23	    0.108
  max. Y    54	    0.114
  max. S    47	    0.164
  mean S     1-53   0.089
       D     1-53   0.104    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.104 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-945	alignment	1gaxA_201	1-862	0.8706	LIGASE/RNA

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
528355	Neisseria gonorrhoeae PID1	1 (0.03%)	0.0	1-945	1-945	1217	100	945	ref|WP_003698999.1|	valyl-tRNA synthase [Neisseria gonorrhoeae] gb|EEZ53404.1| v...
528348	Neisseria gonorrhoeae DGI2	1 (0.03%)	0.0	1-945	1-945	1217	100	945	ref|WP_004466951.1|	valyl-tRNA synthase [Neisseria gonorrhoeae] gb|EFE05210.1| v...
528351	Neisseria gonorrhoeae F62	1 (0.03%)	0.0	1-945	1-945	1217	100	945	ref|WP_003694324.1|	valyl-tRNA synthase [Neisseria gonorrhoeae] gb|EEZ46556.1| v...
528354	Neisseria gonorrhoeae MS11	1 (0.03%)	0.0	1-945	1-945	1217	100	945	ref|YP_008503484.1|	valyl-tRNA synthetase [Neisseria gonorrhoeae MS11] ref|WP_00...
940296	Neisseria gonorrhoeae TCDC-NG08107	1 (0.03%)	0.0	1-945	1-945	1216	100	945	ref|YP_005890806.1|	valyl-tRNA synthetase [Neisseria gonorrhoeae TCDC-NG08107] r...
528358	Neisseria gonorrhoeae PID332	1 (0.03%)	0.0	1-945	1-945	1216	100	945	ref|WP_003700571.1|	valyl-tRNA synthase [Neisseria gonorrhoeae] gb|EEZ55738.1| v...
528356	Neisseria gonorrhoeae PID18	1 (0.03%)	0.0	1-945	1-945	1216	100	945	ref|YP_208839.1|	valyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090] ref|YP...
528359	Neisseria gonorrhoeae SK-92-679	1 (0.03%)	0.0	1-945	1-945	1215	100	945	ref|WP_003700755.1|	valyl-tRNA synthase [Neisseria gonorrhoeae] gb|EEZ55962.1| v...
1069616	Neisseria meningitidis 98008	1 (0.03%)	0.0	1-945	1-945	1217	98	945	ref|WP_002237539.1|	valyl-tRNA synthase [Neisseria meningitidis] gb|EJU69254.1| ...
486	Neisseria lactamica	1 (0.03%)	0.0	1-945	1-945	1215	98	945	ref|WP_019272745.1|	valyl-tRNA synthase [Neisseria lactamica]
1095700	Neisseria meningitidis 87255	1 (0.03%)	0.0	1-945	1-945	1215	98	945	ref|YP_005893089.1|	valyl-tRNA synthetase [Neisseria meningitidis G2136] ref|WP_...
1069615	Neisseria meningitidis NM576	1 (0.03%)	0.0	1-945	1-945	1215	98	945	ref|WP_002235374.1|	valyl-tRNA synthase [Neisseria meningitidis] gb|EJU61272.1| ...
935588	Neisseria meningitidis M01-240355	1 (0.03%)	0.0	1-945	1-945	1215	98	945	ref|YP_005900866.1|	valyl-tRNA synthetase [Neisseria meningitidis M01-240355] re...
935593	Neisseria meningitidis M04-240196	1 (0.03%)	0.0	1-945	1-945	1213	98	945	ref|YP_005896959.1|	valyl-tRNA synthetase [Neisseria meningitidis M04-240196] re...
489653	Neisseria lactamica 020-06	1 (0.03%)	0.0	1-945	1-945	1212	98	945	ref|YP_004047760.1|	valyl-tRNA synthetase [Neisseria lactamica 020-06] ref|WP_01...
1069619	Neisseria meningitidis NM2657	1 (0.03%)	0.0	1-945	1-945	1211	98	945	ref|WP_002240202.1|	valyl-tRNA synthase [Neisseria meningitidis] emb|CBA07066.1|...
546265	Neisseria lactamica ATCC 23970	1 (0.03%)	0.0	1-945	1-945	1208	98	945	ref|WP_003707193.1|	valyl-tRNA synthase [Neisseria lactamica] gb|EEZ76771.1| val...
546264	Neisseria flavescens NRL30031/H210	1 (0.03%)	0.0	1-945	1-945	1216	97	945	ref|WP_003680611.1|	valyl-tRNA synthase [Neisseria flavescens] gb|EEG33530.1| va...
604162	Neisseria meningitidis 8013	1 (0.03%)	0.0	1-945	1-945	1216	97	945	ref|YP_005877762.1|	valyl-tRNA synthetase (valine--tRNA ligase; ValRS) [Neisseri...
1190579	Neisseria meningitidis NM3173	1 (0.03%)	0.0	1-945	1-945	1216	97	945	ref|NP_273232.1|	valyl-tRNA synthetase [Neisseria meningitidis MC58] ref|YP_0...