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Job 85055 [SSGCID - NegoA.18890.a] [2018-08-01] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] phenylalanyl-tRNA synthetase beta chain - BATCH:85027

Full Structure Predictions  
Model 1

chemical/x-pdb MIME type  PDB file 		Model 2

chemical/x-pdb MIME type  PDB file 		Model 3

chemical/x-pdb MIME type  PDB file 		Model 4

chemical/x-pdb MIME type  PDB file 		Model 5

chemical/x-pdb MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

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Features and Secondary Structure  
  
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MQFSYSWLKTQANPDLSADKLEHLLTMAGLEVEEIDTAAPAFSGVVVAEVKSVEKHPDADRLNVTQVDAGTGELVQIVCGAPNVKPGIKVPCSLPVAVLPGNFKIKPTKMRGVPSNGMLCSTNELGLPDDGVDGLHILPEDAPVGTNIREYLDLDDMLFTLKITPNRADCLSVKGIAREVSALTQCAFTPVEIQTAPIGSEKKQAVRIDAPADCGRFISRVIENVNAKAATPDWMKQRLERSGIRSISALVDIGNYVMLEIGQPMHVFDADKLSGSLIVRRAQNGETLACLNEKTVTLADNTLVVADEKGALSLAGLMGGAASAVSDGTQNIVLEAAWFEPEIIVGKSRQYGFGSDSSFRFERGVDYRLQADAIERATELVLQICGGAAGEMVEAQGKLPEAKQVGLRLGRLKTVLGVDIPAEQVETILQHLGLQPEKTAEGFRITAPSFRFDIEIEADLIEEIGRVYGYENIPDDYTSGRLKMSELPETRRPRFAVYNEMAARGYREVISYAFVDEQWELDFAANAAPIRLQNPLAAQYAVMRSTLIGGLVEILQNNLNRKQNRVRVFEIACVFGKGSDGRFVQNERIGGLWYGAAMPEQWGEKTRNADFYDIKADVENLLKNKAVEFVKTGHPALHPGRAANIVSDGKVIGFVGELHPKWLQKYDLPQAPLVFEIDMAAVLECGKTRYRAVSKFQPVRRDLAFVMPEVMNHDDLLLVLKGAANKLVQEISVFDVYRGTGLPEGMKSVAVKVILQDMENTLTDEAVEPLIGKLIGVATEAGARLRS
tmhmm (0) 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (4%) 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (3%) 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (2%) 
X----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XX
psipred 
----HHHHHHHH-----HHHHHHHHHH----EEE-----------EEEEEEEEEE-----EEEEEEEE-----EEEEEE---------EEEEEE--EEE---EEE-------EEE--EEE--------------------------------------EE------HH--EEHHHHHHHHHHHH--------------------EEEE-------EEEEEEEE--------HHHHHHHHHH-------HH--HHHEEHHH----EEEEE-------EEEEE-----EEEE----EEE-----EEEEE----EEEE---------EE----EEEEEE----HHHHHHHHHHHH---HHHHEEEE----HHHHHHHHHHHHHHHHHH-------EEEEE------EEEEEHHH--EEE-----HHHHHHHHHH---EEEE----EEEE------------HHHHHHHHH-----EE--------------HHHHHHHHHHHHHHH----EEEEE----HHHHHHH-------EE-------HHH------HHHHHHHHHHHH------EEEEEE-EE---------EEEEEEEEEE---------------HHHHHHHHHHHHHH---EEE------------EEEEEE--EEEEEEE---HHHHHHH-----EEEEHH-------------------------EEEEE-----HHHHHHHHHHH-----EEEEEEEEEEE-------EEEEEEEEEE-------HHHHHHHHHHHHHHHHHH--EE--

# SignalP-4.0 gram- predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    49	    0.131
  max. Y     2	    0.119
  max. S     8	    0.152
  mean S     1-1    0.147
       D     1-1    0.132    0.570  NO
Name=tmp_signalp_seq	SP='NO' D=0.132 D-cutoff=0.570 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-787     alignment     3pcoB_202     1-795   0.9887   LIGASE


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
940296Neisseria gonorrhoeae TCDC-NG081071 (0.03%)0.01-7871-7871015100787ref|YP_207463.1|phenylalanyl-tRNA synthetase subunit beta [Neisseria gonorrh...
528355Neisseria gonorrhoeae PID11 (0.03%)0.01-7871-7871014100787ref|WP_003698124.1|phenylalanyl-tRNA synthetase subunit beta [Neisseria gonorrh...
528360Neisseria gonorrhoeae SK-93-10351 (0.03%)0.01-7871-7871012100787ref|WP_003702354.1|phenylalanyl-tRNA synthetase subunit beta [Neisseria gonorrh...
909420Neisseria meningitidis H44/761 (0.03%)0.01-7871-787101794787ref|YP_005900097.1|phenylalanyl-tRNA synthetase subunit beta [Neisseria meningi...
662598Neisseria meningitidis alpha141 (0.03%)0.01-7871-787101794787ref|YP_003082830.1|phenylalanyl-tRNA synthetase subunit beta [Neisseria meningi...
1145177Neisseria meningitidis NM1341 (0.03%)0.01-7871-787101594787ref|WP_002239647.1|phenylalanyl-tRNA synthetase subunit beta [Neisseria meningi...
546267Neisseria polysaccharea ATCC 437681 (0.03%)0.01-7871-787100994787ref|WP_003753157.1|phenylalanyl-tRNA synthetase subunit beta [Neisseria polysac...
1145153Neisseria meningitidis NM951 (0.03%)0.01-7871-787101593787ref|WP_002221235.1|phenylalanyl-tRNA synthetase subunit beta [Neisseria meningi...
935594Neisseria meningitidis M133991 (0.03%)0.01-7871-787101593787ref|WP_002222755.1|phenylalanyl-tRNA synthetase subunit beta [Neisseria meningi...
1190580Neisseria meningitidis NM32301 (0.03%)0.01-7871-787101593787ref|YP_005896140.1|phenylalanyl-tRNA synthetase subunit beta [Neisseria meningi...
1095700Neisseria meningitidis 872551 (0.03%)0.01-7871-787101493787ref|YP_005893576.1|phenylalanyl-tRNA synthetase subunit beta [Neisseria meningi...
1095699Neisseria meningitidis 980801 (0.03%)0.01-7871-787101393787ref|WP_002244909.1|phenylalanine--tRNA ligase, beta subunit [Neisseria meningit...
1095667Neisseria meningitidis 772211 (0.03%)0.01-7871-787101393787ref|WP_002242457.1|phenylalanyl-tRNA synthetase subunit beta [Neisseria meningi...
1145176Neisseria meningitidis 20074611 (0.03%)0.01-7871-787101393787ref|YP_001598836.1|phenylalanyl-tRNA synthetase subunit beta [Neisseria meningi...
1145178Neisseria meningitidis 980021 (0.03%)0.01-7871-787101393787ref|WP_002217648.1|phenylalanyl-tRNA synthetase subunit beta [Neisseria meningi...
1069619Neisseria meningitidis NM26571 (0.03%)0.01-7871-787101393787ref|WP_002240411.1|phenylalanyl-tRNA synthetase subunit beta [Neisseria meningi...
935588Neisseria meningitidis M01-2403551 (0.03%)0.01-7871-787101393787ref|YP_005901387.1|phenylalanyl-tRNA synthetase subunit beta [Neisseria meningi...
1145149Neisseria meningitidis NM361 (0.03%)0.01-7871-787101293787ref|YP_974770.1|phenylalanyl-tRNA synthetase subunit beta [Neisseria meningi...
1145151Neisseria meningitidis NM821 (0.03%)0.01-7871-787101293787ref|WP_002255011.1|phenylalanine--tRNA ligase, beta subunit [Neisseria meningit...
1145167Neisseria meningitidis 20010011 (0.03%)0.01-7871-787101293787ref|WP_002258138.1|phenylalanine--tRNA ligase, beta subunit [Neisseria meningit...



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