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Job 85057 [SSGCID - NegoA.19228.a] [2018-08-01] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] ribosomal large subunit pseudouridine synthase D - BATCH:85027

Full Structure Predictions  
Model 1

chemical/x-pdb MIME type  PDB file 		Model 2

chemical/x-pdb MIME type  PDB file 		Model 3

chemical/x-pdb MIME type  PDB file 		Model 4

chemical/x-pdb MIME type  PDB file 		Model 5

chemical/x-pdb MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

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Features and Secondary Structure  
  
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MQNTSFDNESDYSDDSDFASASGTENRIGLTVPPELAGGRLDAVLAKLLPDYSRSRLTSWIKEGAVIVNDKPSQPKDKMIGGEQICVTVRPSEENLAFVPEPMDLDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQERTVKRIYRAVANGIVPFDGKIETQIGRDPHNRLKMAAVKFGGKPAVTHVKVLERYLAHSYIECSLGTGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSLGARQALHAYRLSFTHPESGETVSFEAPIPDDIYHLLSVLRLEAGLDSSLSNEEEWQDKFGADDDDDWNEDDYDVEVVYVRE
tmhmm (0) 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (12%) 
---------XXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------XXXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXX--
coiled-coils (0%) 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (9%) 
XXXX---XXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXX--X------------------------------------------------------------------------------------
psipred 
-------------------------EEEEEEE-------HHHHHHHHH-----HHHHHHHHH--EEEE--EEE----------EEEEE------------------EEEE---EEEEE-----EE----------HHHHHHHHHHH--------EE--------EEEEEE--HHHHHHHHHHHHH----EEEEEEEE-------EEEEE---------EEEE-----EEEEEEEEEEEEE---EEEEEE-----HHHHHHHHHH--------------------HHHHHH-----HHHHH----EEE------EEEEEE--HHHHHHHHHHHHHH----------HHHHHH--------------EEEEEEE--

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    36	    0.111
  max. Y    36	    0.104
  max. S    38	    0.111
  mean S     1-35   0.097
       D     1-35   0.100    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.100 D-cutoff=0.450 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-374     alignment     4lgtD_310     1-247   0.627000   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
528354Neisseria gonorrhoeae MS111 (0.03%)1E-1411-3741-374507100374ref|YP_002001048.1|protein RluD [Neisseria gonorrhoeae NCCP11945] ref|YP_008502...
528348Neisseria gonorrhoeae DGI21 (0.03%)1E-1411-37419-392507100374ref|WP_003704428.1|ribosomal large subunit pseudouridine synthase D [Neisseria ...
528351Neisseria gonorrhoeae F621 (0.03%)1E-1401-3741-374505100374ref|YP_207440.1|protein RluD [Neisseria gonorrhoeae FA 1090] ref|WP_00369270...
940296Neisseria gonorrhoeae TCDC-NG081071 (0.03%)1E-1401-3741-37450399374ref|YP_005889152.1|protein RluD [Neisseria gonorrhoeae TCDC-NG08107] ref|WP_003...
1069621Neisseria meningitidis NM30811 (0.03%)1E-1411-3741-37450998374ref|WP_002242501.1|ribosomal large subunit pseudouridine synthase D [Neisseria ...
1069608Neisseria meningitidis 930031 (0.03%)1E-1411-3741-37450898374ref|WP_002232021.1|ribosomal large subunit pseudouridine synthase D [Neisseria ...
1190580Neisseria meningitidis NM32301 (0.03%)1E-1411-3741-37450898374ref|YP_005896166.1|ribosomal large subunit pseudouridine synthase D [Neisseria ...
942513Neisseria meningitidis WUE 25941 (0.03%)1E-1411-37419-39250798374ref|YP_005891535.1|ribosomal large subunit pseudouridine synthase D [Neisseria ...
862513Neisseria meningitidis ATCC 130911 (0.03%)1E-1411-3741-37450798374ref|WP_002214132.1|ribosomal large subunit pseudouridine synthase D [Neisseria ...
1145178Neisseria meningitidis 980021 (0.03%)1E-1411-3741-37450798374ref|WP_002217675.1|ribosomal large subunit pseudouridine synthase D [Neisseria ...
1145144Neisseria meningitidis NM6071 (0.03%)1E-1401-3741-37450598374ref|WP_002246063.1|pseudouridine synthase, RluA family protein [Neisseria menin...
935588Neisseria meningitidis M01-2403551 (0.03%)1E-1351-3741-37448798374ref|YP_005901363.1|ribosomal large subunit pseudouridine synthase D [Neisseria ...
1069609Neisseria meningitidis 930041 (0.03%)1E-1341-3741-37448598374ref|WP_002233696.1|ribosomal large subunit pseudouridine synthase D [Neisseria ...
1145194Neisseria meningitidis NM1651 (0.03%)1E-1341-3741-37448598374ref|WP_002229205.1|ribosomal large subunit pseudouridine synthase D [Neisseria ...
1069622Neisseria meningitidis NM30011 (0.03%)1E-1341-3741-37448598374ref|WP_002243394.1|ribosomal large subunit pseudouridine synthase D [Neisseria ...
1069616Neisseria meningitidis 980081 (0.03%)1E-1341-3741-37448598374ref|WP_002237791.1|ribosomal large subunit pseudouridine synthase D [Neisseria ...
1145130Neisseria meningitidis 611061 (0.03%)1E-1341-3741-37448498374ref|WP_002250089.1|pseudouridine synthase, RluA family protein [Neisseria menin...
1145134Neisseria meningitidis 970271 (0.03%)1E-1331-3741-37448298374ref|YP_002342338.1|ribosomal large subunit pseudouridine synthase D [Neisseria ...
1145131Neisseria meningitidis 700821 (0.03%)1E-1331-3741-37448298374ref|WP_002236818.1|ribosomal large subunit pseudouridine synthase D [Neisseria ...
1190581Neisseria meningitidis NM28662 (0.05%)1E-1331-3741-37448198374ref|YP_005882342.1|putative ribosomal large subunit pseudouridine synthase D [N...



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